Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A17
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)           29   2.1  
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 350 ILDVLKKKMRQTKEEMEKYQDECE 421
           +LDV++K  +Q K E+EKYQ   +
Sbjct: 142 VLDVMEKLKQQLKSELEKYQSSAQ 165


>SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)
          Length = 245

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/21 (52%), Positives = 19/21 (90%)
 Frame = +2

Query: 353 LDVLKKKMRQTKEEMEKYQDE 415
           +DVLKKK+ QT++E+EK +++
Sbjct: 1   MDVLKKKVVQTRQEIEKAENK 21


>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1399

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 350 ILDVLKKKMRQTKEEMEKYQDECE 421
           + D L+ K+R T+EE+E+Y+   E
Sbjct: 218 VADELRDKLRITEEELERYRSSSE 241


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 353  LDVLKKKMRQTKEEMEKYQD 412
            +D LKKK+  TK  ++KY+D
Sbjct: 2552 IDHLKKKVEDTKAAVDKYED 2571


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,439
Number of Sequences: 59808
Number of extensions: 216151
Number of successful extensions: 456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)