Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A17
         (423 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein.                31   1.2  
U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protei...    31   1.2  
AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F, 3...    31   1.2  
AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F, 3...    31   1.2  

>U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein.
          Length = 3113

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 320  KMTTNMQQGTILDVLKKKMRQTKEEMEKYQDEC 418
            ++ T  ++ T LD L +KM++  +E+E +Q EC
Sbjct: 1965 ELDTMSKKTTALDQLSEKMKEKTQELESHQSEC 1997


>U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protein
            protein.
          Length = 3210

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 320  KMTTNMQQGTILDVLKKKMRQTKEEMEKYQDEC 418
            ++ T  ++ T LD L +KM++  +E+E +Q EC
Sbjct: 2062 ELDTMSKKTTALDQLSEKMKEKTQELESHQSEC 2094


>AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F,
            350/400ka (mitosin) protein.
          Length = 3114

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 320  KMTTNMQQGTILDVLKKKMRQTKEEMEKYQDEC 418
            ++ T  ++ T LD L +KM++  +E+E +Q EC
Sbjct: 1966 ELDTMSKKTTALDQLSEKMKEKTQELESHQSEC 1998


>AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F,
            350/400ka (mitosin) protein.
          Length = 3114

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 320  KMTTNMQQGTILDVLKKKMRQTKEEMEKYQDEC 418
            ++ T  ++ T LD L +KM++  +E+E +Q EC
Sbjct: 1966 ELDTMSKKTTALDQLSEKMKEKTQELESHQSEC 1998


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,357,422
Number of Sequences: 237096
Number of extensions: 1074230
Number of successful extensions: 1823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)