Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A17
         (423 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1991|AAF55163.2|  339|Drosophila melanogaster CG4898-PB...    68   5e-12
J03502-1|AAA28972.1|  252|Drosophila melanogaster protein ( D.me...    64   6e-11
AY060414-1|AAL25453.1|  252|Drosophila melanogaster LD37158p pro...    64   6e-11
AE014297-2001|AAF55164.2|  252|Drosophila melanogaster CG4898-PA...    64   6e-11

>AE014297-1991|AAF55163.2|  339|Drosophila melanogaster CG4898-PB,
           isoform B protein.
          Length = 339

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 30/38 (78%), Positives = 35/38 (92%)
 Frame = +2

Query: 308 QKCIKMTTNMQQGTILDVLKKKMRQTKEEMEKYQDECE 421
           +K  KMTT++ QGT+LDVLKKKMRQTKEEMEKY+DECE
Sbjct: 82  KKTTKMTTSIPQGTLLDVLKKKMRQTKEEMEKYKDECE 119


>J03502-1|AAA28972.1|  252|Drosophila melanogaster protein (
           D.melanogaster tropomyosinII non-muscle isoform mRNA,
           complete cds. ).
          Length = 252

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 28/33 (84%), Positives = 31/33 (93%)
 Frame = +2

Query: 323 MTTNMQQGTILDVLKKKMRQTKEEMEKYQDECE 421
           MTT + QGT+LDVLKKKMRQTKEEMEKY+DECE
Sbjct: 1   MTTRLPQGTLLDVLKKKMRQTKEEMEKYKDECE 33


>AY060414-1|AAL25453.1|  252|Drosophila melanogaster LD37158p
           protein.
          Length = 252

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 28/33 (84%), Positives = 32/33 (96%)
 Frame = +2

Query: 323 MTTNMQQGTILDVLKKKMRQTKEEMEKYQDECE 421
           MTT++ QGT+LDVLKKKMRQTKEEMEKY+DECE
Sbjct: 1   MTTSIPQGTLLDVLKKKMRQTKEEMEKYKDECE 33


>AE014297-2001|AAF55164.2|  252|Drosophila melanogaster CG4898-PA,
           isoform A protein.
          Length = 252

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 28/33 (84%), Positives = 32/33 (96%)
 Frame = +2

Query: 323 MTTNMQQGTILDVLKKKMRQTKEEMEKYQDECE 421
           MTT++ QGT+LDVLKKKMRQTKEEMEKY+DECE
Sbjct: 1   MTTSIPQGTLLDVLKKKMRQTKEEMEKYKDECE 33


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,834,926
Number of Sequences: 53049
Number of extensions: 324788
Number of successful extensions: 610
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1292733852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)