Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A17
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D38542-1|BAA07545.1|  256|Caenorhabditis elegans CeTMIII protein.      39   0.002
D38539-3|BAA07542.1|  256|Caenorhabditis elegans CeTMIII protein.      39   0.002
AL132877-5|CAD45604.1|  256|Caenorhabditis elegans Hypothetical ...    39   0.002
AL132877-3|CAC70115.1|  256|Caenorhabditis elegans Hypothetical ...    39   0.002
AF298180-1|AAG10302.1|  256|Caenorhabditis elegans tropomyosin i...    39   0.002
Z93377-11|CAM84803.1|  332|Caenorhabditis elegans Hypothetical p...    30   0.79 
Z81513-15|CAM84808.1|  332|Caenorhabditis elegans Hypothetical p...    30   0.79 
AF016443-9|AAC24273.1|  364|Caenorhabditis elegans Hypothetical ...    27   4.2  
U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>D38542-1|BAA07545.1|  256|Caenorhabditis elegans CeTMIII protein.
          Length = 256

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +2

Query: 338 QQGTILDVLKKKMRQTKEEMEKYQDECE 421
           QQ ++LDVLKKKMRQ +EE E  +DE +
Sbjct: 10  QQTSLLDVLKKKMRQAREEAEAAKDEAD 37


>D38539-3|BAA07542.1|  256|Caenorhabditis elegans CeTMIII protein.
          Length = 256

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +2

Query: 338 QQGTILDVLKKKMRQTKEEMEKYQDECE 421
           QQ ++LDVLKKKMRQ +EE E  +DE +
Sbjct: 10  QQTSLLDVLKKKMRQAREEAEAAKDEAD 37


>AL132877-5|CAD45604.1|  256|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1e protein.
          Length = 256

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +2

Query: 338 QQGTILDVLKKKMRQTKEEMEKYQDECE 421
           QQ ++LDVLKKKMRQ +EE E  +DE +
Sbjct: 10  QQTSLLDVLKKKMRQAREEAEAAKDEAD 37


>AL132877-3|CAC70115.1|  256|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1c protein.
          Length = 256

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +2

Query: 338 QQGTILDVLKKKMRQTKEEMEKYQDECE 421
           QQ ++LDVLKKKMRQ +EE E  +DE +
Sbjct: 10  QQTSLLDVLKKKMRQAREEAEAAKDEAD 37


>AF298180-1|AAG10302.1|  256|Caenorhabditis elegans tropomyosin
           isoform IV protein.
          Length = 256

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +2

Query: 338 QQGTILDVLKKKMRQTKEEMEKYQDECE 421
           QQ ++LDVLKKKMRQ +EE E  +DE +
Sbjct: 10  QQTSLLDVLKKKMRQAREEAEAAKDEAD 37


>Z93377-11|CAM84803.1|  332|Caenorhabditis elegans Hypothetical
           protein F13A7.14 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 332 NMQQGTILDVLKKKMRQTKEEMEKYQDECE 421
           NM   + ++ L+++  Q K+EMEKY+ +CE
Sbjct: 145 NMPSVSDVEKLRRERDQFKKEMEKYRSKCE 174


>Z81513-15|CAM84808.1|  332|Caenorhabditis elegans Hypothetical
           protein F13A7.14 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 332 NMQQGTILDVLKKKMRQTKEEMEKYQDECE 421
           NM   + ++ L+++  Q K+EMEKY+ +CE
Sbjct: 145 NMPSVSDVEKLRRERDQFKKEMEKYRSKCE 174


>AF016443-9|AAC24273.1|  364|Caenorhabditis elegans Hypothetical
           protein C17E7.4 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 353 LDVLKKKMRQTKEEMEKYQDECE 421
           L+ LKK+  Q K+EM +Y+ +CE
Sbjct: 196 LEQLKKERDQYKKEMRRYKAKCE 218


>U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical
           protein F54E7.5 protein.
          Length = 305

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 372 FFFKTSRIVPCCMLVVIFMHFCV*IHFLNFKN*IHLRPS 256
           F F T  ++  C++++    FC+ + F+  +    LR S
Sbjct: 181 FIFSTQHLLIACLILLCLTTFCIIVFFITLRRLRKLRIS 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,683,640
Number of Sequences: 27780
Number of extensions: 164679
Number of successful extensions: 409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)