Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A17
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67620.1 68418.m08526 expressed protein                             31   0.43 
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ...    26   9.1  
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ...    26   9.1  
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c...    26   9.1  

>At5g67620.1 68418.m08526 expressed protein 
          Length = 182

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = +2

Query: 305 TQKCIKMTTNMQQGTILDVLKKKMRQTKEEMEK 403
           T+KC+K+   +++G  LD+ KKK +  K+++++
Sbjct: 92  TKKCVKLGKLLKEGGGLDLTKKKTKHRKKKLDQ 124


>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
           identical to WIP4 protein [Arabidopsis thaliana]
           gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 412

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 243 WHFREKGEGVFSF*SLGSEFKHKSA*K 323
           W   EK  G   + S GS+FKHK + K
Sbjct: 355 WRTHEKNCGKLWYCSCGSDFKHKRSLK 381


>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
           identical to WIP5 protein [Arabidopsis thaliana]
           gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 337

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 243 WHFREKGEGVFSF*SLGSEFKHKSA*K 323
           W   EK  G   + S GS+FKHK + K
Sbjct: 277 WRTHEKNCGKLWYCSCGSDFKHKRSLK 303


>At1g27750.1 68414.m03391 ubiquitin system component Cue
            domain-containing protein very low similarity to ASC-1
            complex subunit P100 [Homo sapiens] GI:12061187; contains
            Pfam profile PF02845: CUE domain
          Length = 1973

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 170  YSPAVFIRAEPISTLRGNNE 229
            Y+PAVFI A P+ T  G++E
Sbjct: 1426 YTPAVFILACPVETSYGSDE 1445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,985,495
Number of Sequences: 28952
Number of extensions: 149191
Number of successful extensions: 326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)