Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A16
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420     29   2.8  
03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137...    27   8.6  

>04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420
          Length = 186

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 256 LVALFDTHATPRHAA-PCHAMSCHLIILFLMHFSLSIEXYTFALFY 390
           L  L DT+A+P   A  CH ++C L++     F+  I  +T    Y
Sbjct: 77  LEVLADTNASPFSGAFSCHLLACGLLVHAFSDFTKDICNFTVVALY 122


>03_03_0132 +
           14711645-14711839,14712641-14712970,14713689-14713751,
           14713833-14713906,14714004-14714099,14714705-14714759,
           14714867-14714971,14715054-14715135,14715450-14715562,
           14715717-14716118
          Length = 504

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 271 DTHATPRHAAPCHAMSCHLIILFLMHFSLSIE 366
           D  + PR+  P H  SC L I F  H  L+I+
Sbjct: 215 DGRSIPRYLLPEHVTSCCLRISFSAHKDLNIK 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,438,501
Number of Sequences: 37544
Number of extensions: 180070
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)