Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A16
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_2358| Best HMM Match : Protamine_P2 (HMM E-Value=6.1)               27   6.6  
SB_12992| Best HMM Match : LIM (HMM E-Value=0.16)                      27   8.8  
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)               27   8.8  
SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                27   8.8  
SB_24174| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 335 NIIKWHDMAWQGAAWRGVAWVSNNATSTSRSPQSLDVSQKGLTIMLSSYTKEY 177
           +IIK +D   +G AW+ +       T  SRS   +     G T+M+ +Y  EY
Sbjct: 605 SIIKTNDSHEEGGAWKPLKPTEGELTFMSRSTDGI----PGKTLMMVAYEPEY 653


>SB_2358| Best HMM Match : Protamine_P2 (HMM E-Value=6.1)
          Length = 96

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 337 IILSSGMTWHGKAPRGAAWHGYQTMRL 257
           +I  S  TW+G     A WHG+   R+
Sbjct: 29  VIARSQYTWYGTVTVHAVWHGHSRTRV 55


>SB_12992| Best HMM Match : LIM (HMM E-Value=0.16)
          Length = 411

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 314 MAWQGAAWRGVAWVSNNATSTSRSPQSLDVSQKG 213
           + W+ A W  V WV  N   T R    +D S +G
Sbjct: 241 LEWKYAGWGTVHWVQGNTIQTPRRLFIIDHSLEG 274


>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
          Length = 361

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 273 YPCHAAPRGALPCHVMP 323
           +PCH+ P    PCH  P
Sbjct: 62  HPCHSPPTAVRPCHSPP 78


>SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 413

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -2

Query: 293 WRGVAWVSNNATSTSRSPQSLDVSQKGLTIMLSSYTKEYLKSNGTV 156
           W    ++++ A + +    S ++SQ  L  +++ Y  EY+ S+G V
Sbjct: 178 WFNPIYLTDQANNYNTDTYSQEISQPQLHDLVTKYKPEYIFSDGDV 223


>SB_24174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 307 GKAPRGAAWHGYQTMRLALADRLNHW 230
           G  P G +WH  Q  +L L+  LN+W
Sbjct: 104 GTGPAGGSWHNMQGSQLTLS--LNNW 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,418,165
Number of Sequences: 59808
Number of extensions: 221293
Number of successful extensions: 677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)