Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A16
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65320.1 68414.m07407 CBS domain-containing protein contains ...    30   0.77 
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    28   4.1  
At5g51130.1 68418.m06340 expressed protein contains similarity t...    27   7.2  
At1g49320.1 68414.m05528 BURP domain-containing protein similari...    27   7.2  

>At1g65320.1 68414.m07407 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 425

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -2

Query: 329 IKWHDMAWQGAAWRGVAWVSNNATSTSRSPQSLDVSQKGLTIMLSSYTKEYLKSNGTVIR 150
           + W  M+ + +      W+ N+  S+S S  S D + +  T M SS  K    S   VIR
Sbjct: 138 VVWRGMSKRFSILYNGKWLKNSENSSSSSGLSADSTNRPTTSMTSSRDKFCCLSREDVIR 197

Query: 149 YI 144
           ++
Sbjct: 198 FL 199


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to chromatin
           remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
           GI:6478518; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00628: PHD-finger, PF00385:
           'chromo' (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 335 NIIKWHDMAWQGAAWRGVAWVSNNATSTSRSPQS 234
           N++++H  A   A  R   W + N+T T++ P S
Sbjct: 751 NVVEYHGSAKGRAIIRDYEWHAKNSTGTTKKPTS 784


>At5g51130.1 68418.m06340 expressed protein contains similarity to
           unknown protein (pir||T26512)
          Length = 318

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -1

Query: 504 KKRNYKSLPHANY*NYY---ILNETEE 433
           KK+N +  P  NY NYY   I N+T+E
Sbjct: 55  KKKNQEVYPFGNYRNYYGYRISNDTDE 81


>At1g49320.1 68414.m05528 BURP domain-containing protein similarity
           to SP|Q08298 Dehydration-responsive protein RD22
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF03181: BURP domain
          Length = 280

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 291 PRGALPCHVMPLDNII 338
           PR A  CH  PLDNI+
Sbjct: 261 PRSAPVCHFFPLDNIV 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,734,268
Number of Sequences: 28952
Number of extensions: 152638
Number of successful extensions: 283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)