Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A15
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 223 1e-58
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 214 4e-56
At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NA... 168 3e-42
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA... 159 2e-39
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA... 159 2e-39
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA... 158 3e-39
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 122 2e-28
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 120 6e-28
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 119 2e-27
At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenas... 53 2e-07
At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NA... 32 0.37
At5g40050.1 68418.m04858 F-box family protein contains F-box dom... 29 2.0
At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NA... 29 2.0
At5g62000.3 68418.m07784 transcriptional factor B3 family protei... 29 2.6
At5g62000.2 68418.m07783 transcriptional factor B3 family protei... 29 2.6
At5g62000.1 68418.m07782 transcriptional factor B3 family protei... 29 2.6
At5g43840.1 68418.m05360 heat shock transcription factor family ... 29 3.5
At3g24760.1 68416.m03108 F-box family protein ; similar to SKP... 29 3.5
At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NA... 28 4.6
At5g24430.1 68418.m02879 calcium-dependent protein kinase, putat... 28 6.1
At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206... 28 6.1
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family... 28 6.1
At5g06839.1 68418.m00773 bZIP family transcription factor contai... 27 8.0
At2g34960.1 68415.m04290 amino acid permease family protein simi... 27 8.0
At1g27660.1 68414.m03381 ethylene-responsive protein -related co... 27 8.0
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom... 27 8.0
>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
GI:3021506
Length = 374
Score = 223 bits (544), Expect = 1e-58
Identities = 101/166 (60%), Positives = 134/166 (80%), Gaps = 1/166 (0%)
Frame = +3
Query: 3 AVHKANIMRMSDGLFLRCCRDLATKYSDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLYG 182
A+HKANIM+ +DGLFL+CCR++A KY +I +EE +D C+ +V++P+ FDVLVMPNLYG
Sbjct: 209 AIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYG 268
Query: 183 DIMSDMCSGLVGGLGLTPSGNIGKNG-ALFESVHGTAPDIAGKDMANPTALLLSAIMMLR 359
DI+SD+C+GLVGGLGLTPS NIG++G AL E+VHG+APDIAGK++ANPTALLLS +MMLR
Sbjct: 269 DIISDLCAGLVGGLGLTPSCNIGEDGVALAEAVHGSAPDIAGKNLANPTALLLSGVMMLR 328
Query: 360 HLQLNEHADRVQNACYEVLREGKSLTGDLGGTGKCSEYTNAIISKL 497
HL+ NE A+++ +A + EGK T DLGG+ +E+T AI L
Sbjct: 329 HLKFNEQAEQIHSAIINTIAEGKYRTADLGGSSTTTEFTKAICDHL 374
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 214 bits (523), Expect = 4e-56
Identities = 97/166 (58%), Positives = 133/166 (80%), Gaps = 1/166 (0%)
Frame = +3
Query: 3 AVHKANIMRMSDGLFLRCCRDLATKYSDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLYG 182
A+HKANIM+ +DGLFL+CC ++A KY +I +E+ +D C+ +V++P+ FDVLVMPNLYG
Sbjct: 209 AIHKANIMQKTDGLFLQCCDEVAAKYPEIYYEKVVIDNCCMMLVKNPALFDVLVMPNLYG 268
Query: 183 DIMSDMCSGLVGGLGLTPSGNIGKNG-ALFESVHGTAPDIAGKDMANPTALLLSAIMMLR 359
DI+SD+C+GLVGGLGLTPS NIG++G AL E+VHG+APDIAG ++ANPTALLLS +MMLR
Sbjct: 269 DIISDLCAGLVGGLGLTPSMNIGEDGIALAEAVHGSAPDIAGMNLANPTALLLSGVMMLR 328
Query: 360 HLQLNEHADRVQNACYEVLREGKSLTGDLGGTGKCSEYTNAIISKL 497
HL+LN+ A+++ +A + EGK T DLGG+ +++T AI L
Sbjct: 329 HLKLNKQAEQIHSAIINTIAEGKYRTADLGGSSTTTDFTKAICDHL 374
>At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NAD+
isocitrate dehydrogenase subunit 1 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 367
Score = 168 bits (408), Expect = 3e-42
Identities = 82/172 (47%), Positives = 114/172 (66%), Gaps = 6/172 (3%)
Frame = +3
Query: 3 AVHKANIMRMSDGLFLRCCRDLATKYSDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLYG 182
AVHKANIM+++DGLFL CR++A KY I + E +D C+ +V P +FDV+V PNLYG
Sbjct: 198 AVHKANIMKLADGLFLESCREVAKKYPSITYNEIIVDNCCMQLVAKPEQFDVMVTPNLYG 257
Query: 183 DIMSDMCSGLVGGLGLTPSGNIGKNGALFESVHGTAPDIAGKD------MANPTALLLSA 344
+++++ +G+ GG G+ P GN+G + A+FE G + GKD ANP ALLLS+
Sbjct: 258 NLVANTAAGIAGGTGVMPGGNVGADHAVFE--QGASAGNVGKDKIVLENKANPVALLLSS 315
Query: 345 IMMLRHLQLNEHADRVQNACYEVLREGKSLTGDLGGTGKCSEYTNAIISKLN 500
MMLRHLQ ADR++ A +V+ EGK T DLGGT E +A+I+KL+
Sbjct: 316 AMMLRHLQFPSFADRLETAVKKVIAEGKCRTKDLGGTSTTQEVVDAVIAKLD 367
>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 363
Score = 159 bits (385), Expect = 2e-39
Identities = 78/172 (45%), Positives = 109/172 (63%), Gaps = 6/172 (3%)
Frame = +3
Query: 3 AVHKANIMRMSDGLFLRCCRDLATKYSDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLYG 182
AVHKANIM+++DGLFL C+++A KY I + E +D C+ +V P +FDV+V PNLYG
Sbjct: 194 AVHKANIMKLADGLFLESCQEVAKKYPSIAYNEIIVDNCCMQLVARPEQFDVMVTPNLYG 253
Query: 183 DIMSDMCSGLVGGLGLTPSGNIGKNGALFESVHGTAPDIAGKDM------ANPTALLLSA 344
+++++ +G+ GG G+ P GN+G A+FE G + GKD ANP ALLLS+
Sbjct: 254 NLVANTAAGIAGGTGVMPGGNVGAEYAVFE--QGASAGNVGKDTTEEQKNANPVALLLSS 311
Query: 345 IMMLRHLQLNEHADRVQNACYEVLREGKSLTGDLGGTGKCSEYTNAIISKLN 500
MMLRHLQ ADR++ A V+ EG T DLGG E +A+I+ L+
Sbjct: 312 AMMLRHLQFPSFADRLETAVKRVIAEGNCRTEDLGGNSTTQEVVDAVIANLD 363
>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 367
Score = 159 bits (385), Expect = 2e-39
Identities = 78/172 (45%), Positives = 109/172 (63%), Gaps = 6/172 (3%)
Frame = +3
Query: 3 AVHKANIMRMSDGLFLRCCRDLATKYSDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLYG 182
AVHKANIM+++DGLFL C+++A KY I + E +D C+ +V P +FDV+V PNLYG
Sbjct: 198 AVHKANIMKLADGLFLESCQEVAKKYPSIAYNEIIVDNCCMQLVARPEQFDVMVTPNLYG 257
Query: 183 DIMSDMCSGLVGGLGLTPSGNIGKNGALFESVHGTAPDIAGKDM------ANPTALLLSA 344
+++++ +G+ GG G+ P GN+G A+FE G + GKD ANP ALLLS+
Sbjct: 258 NLVANTAAGIAGGTGVMPGGNVGAEYAVFE--QGASAGNVGKDTTEEQKNANPVALLLSS 315
Query: 345 IMMLRHLQLNEHADRVQNACYEVLREGKSLTGDLGGTGKCSEYTNAIISKLN 500
MMLRHLQ ADR++ A V+ EG T DLGG E +A+I+ L+
Sbjct: 316 AMMLRHLQFPSFADRLETAVKRVIAEGNCRTEDLGGNSTTQEVVDAVIANLD 367
>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 368
Score = 158 bits (383), Expect = 3e-39
Identities = 78/171 (45%), Positives = 110/171 (64%), Gaps = 6/171 (3%)
Frame = +3
Query: 3 AVHKANIMRMSDGLFLRCCRDLATKYSDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLYG 182
AVHKANIM+++DGLFL CR++A YS I + E +D C+ +V P +FDV+V PNLYG
Sbjct: 199 AVHKANIMKLADGLFLESCREVAKHYSGITYNEIIVDNCCMQLVAKPEQFDVMVTPNLYG 258
Query: 183 DIMSDMCSGLVGGLGLTPSGNIGKNGALFESVHGTAPDIAGKD------MANPTALLLSA 344
+++++ +G+ GG G+ P GN+G A+FE G + G D ANP ALLLS+
Sbjct: 259 NLIANTAAGIAGGTGVMPGGNVGAEHAIFE--QGASAGNVGNDKMVEQKKANPVALLLSS 316
Query: 345 IMMLRHLQLNEHADRVQNACYEVLREGKSLTGDLGGTGKCSEYTNAIISKL 497
MMLRHL+ ADR++ A +V++EGK T DLGG E +A+I+ L
Sbjct: 317 AMMLRHLRFPTFADRLETAVKQVIKEGKYRTKDLGGDCTTQEVVDAVIAAL 367
>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}
Length = 409
Score = 122 bits (295), Expect = 2e-28
Identities = 61/154 (39%), Positives = 101/154 (65%), Gaps = 2/154 (1%)
Frame = +3
Query: 3 AVHKANIMRMSDGLFLRCCRDLATKYSDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLYG 182
+V KAN++ S L+ + LA++Y D++ Y+D + +++DP +FD +V N++G
Sbjct: 233 SVDKANVLDASI-LWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFG 291
Query: 183 DIMSDMCSGLVGGLGLTPSGNIGKNG-ALFESVHGTAPDIAGKDMANPTALLLSAIMMLR 359
DI+SD S + G +G+ PS ++G++G LFE +HG+APDIAG+D ANP A +LSA M+L+
Sbjct: 292 DILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 351
Query: 360 H-LQLNEHADRVQNACYEVLREGKSLTGDLGGTG 458
+ L + A R+++A + L +G TGD+ G
Sbjct: 352 YGLGEEKAAKRIEDAVVDALNKG-FRTGDIYSPG 384
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 120 bits (290), Expect = 6e-28
Identities = 61/154 (39%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Frame = +3
Query: 3 AVHKANIMRMSDGLFLRCCRDLATKYSDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLYG 182
+V KAN++ S L+ + LA++Y D++ Y+D + +V+DP +FD +V N++G
Sbjct: 230 SVDKANVLDASI-LWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFG 288
Query: 183 DIMSDMCSGLVGGLGLTPSGNIGKNG-ALFESVHGTAPDIAGKDMANPTALLLSAIMMLR 359
DI+SD S + G +G+ PS ++G++G LFE +HG+APDIAG+D ANP A +LSA M+L+
Sbjct: 289 DILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 348
Query: 360 H-LQLNEHADRVQNACYEVLREGKSLTGDLGGTG 458
+ L + A +++A + L +G TGD+ G
Sbjct: 349 YGLGEEKAAKMIEDAVVDALNKG-FRTGDIYSPG 381
>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to
3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
SP|P29102 from [Brassica napus]
Length = 405
Score = 119 bits (286), Expect = 2e-27
Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
Frame = +3
Query: 3 AVHKANIMRMSDGLFLRCCRDLATKYSDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLYG 182
+V KAN++ S L+ + LA++Y D++ Y+D + +V+DP +FD +V N++G
Sbjct: 229 SVDKANVLEASI-LWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFG 287
Query: 183 DIMSDMCSGLVGGLGLTPSGNIGKNG-ALFESVHGTAPDIAGKDMANPTALLLSAIMMLR 359
DI+SD S + G +G+ PS ++ +G LFE +HG+APDIAG+D ANP A +LSA M+L+
Sbjct: 288 DILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 347
Query: 360 H-LQLNEHADRVQNACYEVLREGKSLTGDLGGTG 458
+ L + A R+++A L G TGD+ G
Sbjct: 348 YGLGEEKAAKRIEDAVLVALNNG-FRTGDIYSAG 380
>At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenase
family protein similar to NAD+ dependent isocitrate
dehydrogenase subunit 2 [Arabidopsis thaliana]
GI:1766048; contains Pfam profile PF00180 dehydrogenase,
isocitrate/isopropylmalate family
Length = 294
Score = 52.8 bits (121), Expect = 2e-07
Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Frame = +3
Query: 3 AVHK-ANIMRMSDGLFLRCCRDLATKYSDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLY 179
AVH +++D FL C+++A Y +I + E SK +L+
Sbjct: 153 AVHNNGKYEKLADAFFLESCQEVAKMYPNITYNEIASRETRAIRRHSNSK-------SLW 205
Query: 180 GDIMSDMCSGLVGGLGLTPSGNIGKNGALFESVHGTAPDIAGKDMANPTALLLSAIMMLR 359
I++++ SG+ GG + G + A+FE V + NP ALL S++MMLR
Sbjct: 206 A-IIANIASGVAGG-------SFGDDYAIFEQVGSVG------NHKNPVALLFSSVMMLR 251
Query: 360 HLQLNEHADRVQNACYEVLREGK 428
HL L ADR++ A V+ EGK
Sbjct: 252 HLLLPLFADRLKTAVTRVISEGK 274
>At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NADP+) [Nicotiana tabacum]
GI:3021512; contains Pfam domain PF00180: dehydrogenase,
isocitrate/isopropylmalate family
Length = 485
Score = 31.9 bits (69), Expect = 0.37
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 87 IKFEERYLDTVCLNMVQDPSKFDVLVMPNLYGDIMSDMCSGLVGGLGLTPSGNIGKNGAL 266
I +E R +D + V+ + V N GD+ SD+ + G LGL S + +G
Sbjct: 315 IWYEHRLIDDMVAYAVKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSADGKT 373
Query: 267 FES--VHGT 287
ES HGT
Sbjct: 374 LESEAAHGT 382
>At5g40050.1 68418.m04858 F-box family protein contains F-box domain
Pfam:PF00646
Length = 415
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 96 EERYLDTVCLNMVQDPSKFDVLVMPNLYGDIMSDMCSGLVGG 221
E+ Y +C NM++ K + LV+ LYG +SD G+ GG
Sbjct: 309 EKEYWQLLC-NMIEKSPKLETLVLEGLYG--ISDCEVGIDGG 347
>At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase SP|Q40345 from [Medicago
sativa]
Length = 410
Score = 29.5 bits (63), Expect = 2.0
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 22/167 (13%)
Frame = +3
Query: 12 KANIMRMSDGLFLRCCRDL-----ATKY--SDIKFEERYLDTVCLNMVQDPSKFDVLVMP 170
K I++ DG F +++ +KY + I +E R +D + ++ + V
Sbjct: 212 KNTILKKYDGRFKDIFQEVYEASWKSKYDAAGIWYEHRLIDDMVAYALKSEGGY-VWACK 270
Query: 171 NLYGDIMSDMCSGLVGGLGLTPSGNIGKNGALF--ESVHGTAP------DIAGKDMANPT 326
N GD+ SD + G LGL S + +G E+ HGT G+ N
Sbjct: 271 NYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSI 330
Query: 327 ALLLSAIMMLRH-LQLNEHA------DRVQNACYEVLREGKSLTGDL 446
A + + L H +L+++A ++++ AC + GK +T DL
Sbjct: 331 ASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACVGTVESGK-MTKDL 376
>At5g62000.3 68418.m07784 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 381 HARSTGDVLTS**LREVTRSDLPCPFQRYRELCREQTRIGLRSCLCYRRASAPTPR 214
HA STG + T + S+ PF +Y E + IG+R + + AP R
Sbjct: 292 HAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQR 347
>At5g62000.2 68418.m07783 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 381 HARSTGDVLTS**LREVTRSDLPCPFQRYRELCREQTRIGLRSCLCYRRASAPTPR 214
HA STG + T + S+ PF +Y E + IG+R + + AP R
Sbjct: 292 HAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQR 347
>At5g62000.1 68418.m07782 transcriptional factor B3 family protein /
auxin-responsive factor, putative (ARF1) contains Pfam
profile: PF02362 B3 DNA binding domain; identical to
cDNA ARF1 (auxin response factor) binding protein
GI:2245393
Length = 859
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 381 HARSTGDVLTS**LREVTRSDLPCPFQRYRELCREQTRIGLRSCLCYRRASAPTPR 214
HA STG + T + S+ PF +Y E + IG+R + + AP R
Sbjct: 292 HAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQR 347
>At5g43840.1 68418.m05360 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 282
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 87 IKFEERYLDTVCLNMVQDPSKFDVLVMPNLYGDIMSDMCSGL 212
IK E+ + + + V+D KF V P YGD + D C G+
Sbjct: 194 IKNREQKQEVISSHGVEDNGKF-VKAEPEEYGDDIDDQCGGV 234
>At3g24760.1 68416.m03108 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 383
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 76 NTRTSSSKSATWTPFA*TWCRIPPSST 156
NT + ++S + P + TW R+PPSS+
Sbjct: 71 NTSSFHNQSFAFDPLSNTWLRLPPSSS 97
>At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
NADP-isocitrate dehydrogenase GI:5764653 from [Citrus
limon]; Nicotiana tabacum SP|P50218
Length = 416
Score = 28.3 bits (60), Expect = 4.6
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Frame = +3
Query: 12 KANIMRMSDGLFLRCCRDL-----ATKY--SDIKFEERYLDTVCLNMVQDPSKFDVLVMP 170
K I+++ DG F +++ +KY + I +E R +D + ++ + V
Sbjct: 213 KNTILKIYDGRFKDIFQEVYEANWRSKYEAAGIWYEHRLIDDMVAYAMKSEGGY-VWACK 271
Query: 171 NLYGDIMSDMCSGLVGGLGLTPSGNIGKNGALF--ESVHGT 287
N GD+ SD + G LG+ S + +G E+ HGT
Sbjct: 272 NYDGDVQSDFLAQGYGSLGMMTSVLVCPDGKTIEAEAAHGT 312
>At5g24430.1 68418.m02879 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK1 [Nicotiana tabacum]
gi|16904222|gb|AAL30818
Length = 594
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 304 PAISGAVP*TDSNRAPFLPMLPEGVSPNPPTRP 206
P SG N +PF LP GV+P+P P
Sbjct: 41 PVASGTPEVNSYNISPFQSPLPAGVAPSPARTP 73
>At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206:
Protein of unknown function (DUF715)
Length = 453
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 294 RELCREQTRIGLRSCLCYRRASAPTPR-LDLSTCPT*CHRTS-WAS 163
+ LC T + LR CL + +P R L ++TC CH S W S
Sbjct: 281 KHLCGPATDLSLRCCLSRQDGESPVLRGLAIATC---CHHLSQWKS 323
>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
protein
Length = 558
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 274 DSNRAPFLPMLPEGVSPNPPTRP 206
D N +PF P P P PP RP
Sbjct: 250 DENSSPFAPPTPPPPPPPPPPRP 272
>At5g06839.1 68418.m00773 bZIP family transcription factor contains
Pfam profile: PF00170 bZIP transcription factor
Length = 417
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 244 LPEGVSPNPPTRPEHMSDMMSPYKLGITKTSNLEG 140
LP +P PP H+S+ MS L + K S LEG
Sbjct: 333 LPPASAPLPP----HLSNFMSHMSLALNKLSALEG 363
>At2g34960.1 68415.m04290 amino acid permease family protein similar
to cationic amino acid transporter 3 [Rattus norvegicus]
GI:2116552; contains Pfam profile PF00324: Amino acid
permease
Length = 569
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = -1
Query: 391 TRSACSFNWRCLNIMIAERSNAVGFAMSFPAISGAVP*TDSNRAPFLPMLPEGV 230
TR NW IA N + + F I+G + SN PFLP PEGV
Sbjct: 215 TRKTSLLNW------IASAINTL--VIFFVIIAGFIHADTSNLTPFLPFGPEGV 260
>At1g27660.1 68414.m03381 ethylene-responsive protein -related
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 453
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 333 LLSAIMMLRHLQLNEHADRVQNACYEVLREGKSLTGDLGGT 455
+L++ ++ +L++NEH D + + + G + GD G +
Sbjct: 138 MLNSPVITNYLKINEHKDYTEKLLLKSMSSGFPINGDYGSS 178
>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain; non-consensus TG acceptor splice site at
exon boundary 79262
Length = 880
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 166 CPTCTVTSCRTCAQV*SGGW 225
CP C+ C C Q GGW
Sbjct: 336 CPKCSYELCLNCCQEIRGGW 355
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,232,935
Number of Sequences: 28952
Number of extensions: 335216
Number of successful extensions: 944
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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