Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A14
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.8  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   6.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 33   NLEKWCWSSAAGTQAVKPLS*RITTRAHLTNHTDMLSSPAS 155
            NL++   S  A +  +K L    T + +LT+H  + SSP+S
Sbjct: 1447 NLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSS 1487


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 33   NLEKWCWSSAAGTQAVKPLS*RITTRAHLTNHTDMLSSPAS 155
            NL++   S  A +  +K L    T + +LT+H  + SSP+S
Sbjct: 1443 NLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSS 1483


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 367 FETDPCVETQLLALSWVF 314
           +ETDPCV        W++
Sbjct: 715 YETDPCVRYYPRRKEWLY 732


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
          protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 87 MALRPAYRP 61
          MA+RP YRP
Sbjct: 1  MAIRPVYRP 9


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,127
Number of Sequences: 438
Number of extensions: 2936
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)