Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A13
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    26   1.5  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    25   2.7  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    24   6.2  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    24   6.2  

>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 136 VAMKSVTIFLSAASDSGVI*PSLAMVANRLWWLVLMCWVNS 14
           +A  ++ IFL     S V+    A V+ R W  V MC +NS
Sbjct: 233 IACFAMLIFLLCNVGSHVVWDQPATVSGRSWSWVFMCALNS 273


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
 Frame = +3

Query: 69  KDGQITPESDAALKKIVTDFIATFTQSQ*KLSLIKDSCNLQHLG*I*F---SLWSYVKSC 239
           + GQ+ P     + K+   F+     +Q  +  ++ S  LQ  G +       W+    C
Sbjct: 173 RKGQLGPVVMKTVNKV--SFLGRIEHAQAVVCGVQFSAVLQETGHVIVLGGEKWNVAAEC 230

Query: 240 K-WSADIRVCSNSMLFYLQTCSVSFVWTALNVKTIMECIY 356
             W A+    S+S+      CS+S  W+ L++ +   C+Y
Sbjct: 231 DAWQANNSELSSSI------CSISANWSTLSLLSTEGCVY 264


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 300 YKSANRRACCWNKLLYQLTIYNF*RKT 220
           Y+  ++  CCW+K+++   + N   KT
Sbjct: 570 YEMISQHGCCWSKIIHIQKLENGPLKT 596


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 19  SPSTSRLATRACWPPL--LRMVRSPPSLMLHSRRSSQ 123
           +P  S L     W P+  L++VRS PSL     RS++
Sbjct: 529 APYESELRPPPKWKPMPDLKVVRSRPSLKQRPLRSAE 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,667
Number of Sequences: 5004
Number of extensions: 24166
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)