Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A13
(361 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 31 0.36
07_01_0639 - 4785446-4786186,4786429-4786656,4786727-4786872,478... 29 1.5
10_08_0469 + 18149039-18149420,18149537-18149649 27 3.4
02_01_0498 - 3614621-3614674,3614780-3617161 27 3.4
01_06_1504 + 37821676-37821778,37821855-37822072,37822713-378232... 27 4.4
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 27 5.9
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473... 27 5.9
10_08_1066 + 22666109-22666302,22668316-22668919 26 7.7
05_04_0255 + 19462668-19462695,19463443-19464491 26 7.7
01_06_1502 + 37807954-37808050,37808161-37808378,37808482-378090... 26 7.7
>03_01_0392 +
3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 30.7 bits (66), Expect = 0.36
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Frame = +3
Query: 78 QITPESDAALKKIVTDFIATFTQSQ*KLSLIKDSCNLQHLG*I*FSLWSYVKSCKWSADI 257
+++ ++D+ K+ D T+ K KD+C I F LW+ +K C ++ +
Sbjct: 240 KVSEKADSNHTKVSEDSAKTYHDDSPKKQ--KDACTAPRFENILFPLWNILKDC-FNCEE 296
Query: 258 RV---CSNSMLFYLQTCSVSFV--WTALNVKTIMEC 350
+ C + L +L C + V W + ++ +C
Sbjct: 297 QAHGGCIDDFLSHLMCCCCALVQEWREVEIRGAYDC 332
>07_01_0639 -
4785446-4786186,4786429-4786656,4786727-4786872,
4786986-4787186,4787256-4787432,4787741-4788359
Length = 703
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 13 RNSPSTSRLATRACWPPLLRMVRSPPSLMLHSRRSSQ 123
R P+ T++ PL ++ SPP+L+ S RSS+
Sbjct: 146 RRPPADEATRTQSPTSPLFTVLSSPPALVFRSSRSSR 182
>10_08_0469 + 18149039-18149420,18149537-18149649
Length = 164
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 169 IKLSFYCDWVKVAMKSVTIFLSAASDSGVI 80
I + +YC W+K SV FLS + S I
Sbjct: 131 ISMFYYCIWLKQFYSSVETFLSGSETSETI 160
>02_01_0498 - 3614621-3614674,3614780-3617161
Length = 811
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 312 RMIHYKSANRRACCWNKLLYQLTIYNF*RKTID 214
R I K R CWN ++ LTI++ ++ D
Sbjct: 472 RSIFNKMTERDVVCWNSIISGLTIHSLNKEAFD 504
>01_06_1504 +
37821676-37821778,37821855-37822072,37822713-37823242,
37824040-37824483,37824923-37825616
Length = 662
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 109 LSAASDSGVI*PSLAMVANRLWWLV 35
L AASD+G++ A V +WWLV
Sbjct: 529 LRAASDAGLVDRPDATVPTSVWWLV 553
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 155 LLRLGKGSNEVCDDLLECSIRLGGDL 78
L+ L K N++ DDL+ +R GGDL
Sbjct: 45 LICLNKMWNQLIDDLVLLGVRAGGDL 70
>09_04_0435 -
17545879-17546605,17546721-17546782,17547123-17547335,
17547506-17547590,17547904-17548061,17548174-17548294,
17548765-17548927,17548973-17549097,17550800-17550888,
17550970-17551636,17552671-17552717,17553506-17553862
Length = 937
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = -3
Query: 164 TKLLLRLGKGSNEVCDDLLECSIRLGGDLTIL 69
+K+ + +GS+E C+ +L+ ++ + GD+ L
Sbjct: 522 SKIKCTMCQGSSEQCERILDLTVEIDGDINTL 553
>10_08_1066 + 22666109-22666302,22668316-22668919
Length = 265
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 116 DLLECSIRLGGDLTILSNGGQQAL-VASLDVLGEFLLE 6
+L++ ++ G D+ + GGQ AL VA D + +FL E
Sbjct: 142 ELVKYLVKKGADIAAKTKGGQTALHVAEKDDVRDFLKE 179
>05_04_0255 + 19462668-19462695,19463443-19464491
Length = 358
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 42 HQSLLATIAKDGQITPESDAALKKIVTDFIATFT 143
H L T+ K +TP SDA KK+ + IA +T
Sbjct: 216 HVLLEGTLLKPNMVTPGSDA--KKVSPEVIAEYT 247
>01_06_1502 +
37807954-37808050,37808161-37808378,37808482-37809011,
37809107-37809875
Length = 537
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 109 LSAASDSGVI*PSLAMVANRLWWLV 35
L AASD+G+I A V +WWLV
Sbjct: 404 LRAASDAGLIDRPDATVPMGVWWLV 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,403,924
Number of Sequences: 37544
Number of extensions: 164085
Number of successful extensions: 424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -