Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A13
(361 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.37
SB_29505| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-33) 30 0.49
SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 30 0.65
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_37785| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 27 6.1
SB_19313| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-27) 27 6.1
SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16) 26 8.0
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 26 8.0
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 30.7 bits (66), Expect = 0.37
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -1
Query: 190 CRLQLSLIKLSFYCDWVKVAMKSVTIFL--SAASDSGVI*PSLAMVANRLWWLVLMCWVN 17
CR QL ++L+ WV + K V+I L S +S S + V+ L WL ++C +
Sbjct: 263 CRYQLDCVRLAVGVSWVVLVGKPVSIGLCRSGSSVSWAVLVVQPSVSVGLCWLGILCRLG 322
Query: 16 SFSKA 2
+A
Sbjct: 323 CVDRA 327
>SB_29505| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-33)
Length = 300
Score = 30.3 bits (65), Expect = 0.49
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -1
Query: 190 CRLQLSLIKLSFYCDWVKVAMKSVTIFLSAASDSGVI*PSLAMVANRLWWLVLMCWVNS 14
C++ LI L F + +++ S +L+ S L M R+ WL+++ WV+S
Sbjct: 41 CQIHAFLISLGFNASLITLSLVSFDRYLAITSPLKY---PLKMTGRRMRWLLVLSWVHS 96
>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 313
Score = 29.9 bits (64), Expect = 0.65
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 3 AFEKEFTQHIKTSHQSLLATIAKDGQITPESDAALKKIVTDFIATFT 143
AFE+ + H +LLA I + G + D LK + F AT T
Sbjct: 266 AFEQALIAYFNRDHAALLAKINEKGDFNDDIDGQLKAGIEKFKATQT 312
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 329 IQCSPYE*YTTSLQIEEHAVGTNSYI 252
+ C PY Y+T E HA TN Y+
Sbjct: 848 VSCVPYSPYSTESSTELHAHLTNQYV 873
>SB_37785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 519
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 70 LAMVANRLWWLVLMCWVNSFS 8
L + +RL WL CW++SF+
Sbjct: 120 LRVTKSRLVWLAWACWISSFA 140
>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1922
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 6 FEKEFTQHIKTSHQSLLATIAKDGQITPESDAALKKIVTDFIATF 140
F ++ T+ S+Q + I+ G PESD+ +IV + AT+
Sbjct: 952 FARKLTEEEVKSYQGPVHYISHHGLARPESDSTPLRIVFNMSATY 996
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 24 QHIKTSHQSLLATIAKDGQITPESDAALKKIVTDFIATFTQSQ*KLSLIKDSCN 185
QH+ SH+ T+ + + ++D++ +K+ +AT LS+ + CN
Sbjct: 342 QHLAVSHEKGKITVLQLSALLKQADSSKRKLTLTRLATAQVPFTVLSITGNQCN 395
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 26.6 bits (56), Expect = 6.1
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -1
Query: 73 SLAMVANRLWWLVLMCWV 20
S+ + +RL W++L+CW+
Sbjct: 880 SVQVTKSRLRWIILLCWI 897
>SB_19313| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-27)
Length = 545
Score = 26.6 bits (56), Expect = 6.1
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -1
Query: 73 SLAMVANRLWWLVLMCWV 20
S+ + +RL W++L+CW+
Sbjct: 128 SVQVTKSRLRWIILLCWI 145
>SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)
Length = 1134
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 137 GSNEVC-DDLLECSIRLGGDLTILSNGGQQALVASLDVLGE 18
G +E+ DD++ C GD+ I GQ+A A V+GE
Sbjct: 160 GKDEIQEDDIISC-YEYAGDIAIWLMAGQKASFAQTYVIGE 199
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 9 EKEFTQH---IKTSHQSLLATI-AKDGQITPESDAALKKIVTD 125
EK F Q +K SH + + +++ Q+T E D LKK+ ++
Sbjct: 1026 EKSFRQERTKMKNSHDKEMVQLESREDQLTKEMDTKLKKLTSE 1068
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,600
Number of Sequences: 59808
Number of extensions: 180704
Number of successful extensions: 435
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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