Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A13
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   0.83 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   0.83 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   7.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 285 YLQTCSVSFVWTALNVKTIMECIYI 359
           +L TCS  F+    + K  + CI+I
Sbjct: 202 FLTTCSFDFLTDDEDTKVFVTCIFI 226


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 285 YLQTCSVSFVWTALNVKTIMECIYI 359
           +L TCS  F+    + K  + CI+I
Sbjct: 202 FLTTCSFDFLTDDEDTKVFVTCIFI 226


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 145  WVKVAMKSVTIFLSAASDSG 86
            +++VA  S+T+ L+A SD G
Sbjct: 1469 FIEVATNSITLHLNAWSDGG 1488


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 36   TSHQSLLATIAKDGQITPESDAALKKIVTDFIATFTQSQ*KLSLIKDSCN 185
            T+  S++A +A     T + + A+KK +T  I   TQS+     +KD  N
Sbjct: 933  TNASSMIAPVALTAA-TCDQNKAVKKHITTTIDCSTQSEYYELEVKDQKN 981


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 1   LLSRRNSPSTSRLATRACWPPLLRMVR 81
           L+S  ++P T R    A +PP  R+ R
Sbjct: 389 LVSGSSTPGTGREHDPAKFPPSFRISR 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,517
Number of Sequences: 438
Number of extensions: 1747
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)