Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A13
         (361 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   2.8  
At5g52547.1 68418.m06523 expressed protein                             26   6.6  
At5g65800.1 68418.m08279 1-aminocyclopropane-1-carboxylate synth...    26   8.7  
At4g38940.1 68417.m05518 kelch repeat-containing F-box family pr...    26   8.7  
At1g74800.1 68414.m08666 galactosyltransferase family protein co...    26   8.7  
At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/PO...    26   8.7  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 10  RRNSPSTSRLATRACWPPLLRMVRSP 87
           RR SPS+SR  +R+  PP+L    SP
Sbjct: 607 RRRSPSSSRSPSRSRSPPVLHRSPSP 632


>At5g52547.1 68418.m06523 expressed protein
          Length = 106

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 9   EKEFTQHIKTSHQSLLATIAKDGQITPESDAALK-KIVTDFIA 134
           +KEF  + K S ++LL T+ +      + + ALK K++TD ++
Sbjct: 62  QKEFELNEKLSKKTLLETLLRKTAPLSDLEMALKNKLITDILS 104


>At5g65800.1 68418.m08279 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           ACC synthases from Arabidopsis thaliana [GI:940370],
           Lycopersicon esculentum [GI:508609], Cucumis sativus
           [GI:3641649]
          Length = 470

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 155 LLRLGKGSNEVCDDLLECSIRLGGDLTILSNGGQ 54
           ++++G   N++C DL+E  +    D   L   GQ
Sbjct: 40  MIQMGLAENQLCFDLIESWLTKNPDAASLKRNGQ 73


>At4g38940.1 68417.m05518 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 370

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 234 SCKWSADIRVCSNSMLFYLQTCSVSFVWTA 323
           +CKWS  +      ++ +LQ    + +W A
Sbjct: 304 ACKWSKTVSYTGGKLVLFLQKTEKTEIWCA 333


>At1g74800.1 68414.m08666 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 672

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 303 HYKSANRRACCWNKLLYQ 250
           HY+S  +  C W+KLL Q
Sbjct: 646 HYQSPRQMICLWDKLLRQ 663


>At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           similar to p300/CBP acetyltransferase-related protein
           (GI:12597461) [Arabidopsis thaliana];  similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 364

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 346 SMIVLTFNAVHTNDTLQVCK*KSMLLEQTLISA 248
           SM++  F +V + +  +V K  + LLEQ LI A
Sbjct: 181 SMVIKDFKSVSSTEGWKVMKRSNPLLEQELIEA 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,463,649
Number of Sequences: 28952
Number of extensions: 129046
Number of successful extensions: 301
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)