Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A12
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    28   0.74 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   1.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   4.0  
SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr 1...    24   9.1  

>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 318 VTHSGSRRHELSQP-PGIVSRPGYPPCRSRGAPTRRCPRGEA 196
           ++ S S  H  SQ  PG  S P  P   + G   ++CP  EA
Sbjct: 66  ISSSSSEPHHTSQSTPGETSSPVCPVSGAHGGADKKCPALEA 107


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 339 FHRQEHRVTHSGSRRHELSQPPGIVSRPGYPPCRSR 232
           FHRQEH+V H   R H   +P        YP C+ R
Sbjct: 13  FHRQEHQVRH--IRSHTGEKP----FECSYPSCKKR 42


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 279 AERARVSEILNESRDAPDDEINLD 350
           A R+ +S +L ES D P DE++L+
Sbjct: 219 ALRSSLSSLLTESIDLPIDEVSLE 242


>SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 165

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 210 DISESEHLENGMADSLDERRFQEAERARVSEILNESRDAPDDEINLDDP 356
           +I   E  E      L+   F EAERA  + I +  + AP+ ++ L  P
Sbjct: 3   NIRNIERSEVEEVSKLEAICFPEAERASFARIKDRVKRAPEIQLGLFAP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,219
Number of Sequences: 5004
Number of extensions: 30188
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)