Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A12
(445 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.011
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 34 0.061
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 0.19
SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 0.24
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 32 0.24
SB_49635| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.75
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.75
SB_15403| Best HMM Match : CH (HMM E-Value=0) 30 0.99
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 1.3
SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09) 29 2.3
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13) 28 3.0
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08) 28 4.0
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 28 4.0
SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26) 28 4.0
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08) 27 5.3
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 27 7.0
SB_44864| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 27 9.2
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 27 9.2
>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 36.3 bits (80), Expect = 0.011
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 351 DPCMKVHCSARRVC*INEHGEAICNCIKECP 443
DPC V C A + C + G+A C C+ ECP
Sbjct: 57 DPCSNVFCHAGQEC-VAAKGKASCECLSECP 86
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 33.9 bits (74), Expect = 0.061
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = -2
Query: 279 PPGIVSRPGYPPCRSRGAPTRRCPRGEAPR 190
PPG + PG PP R AP PRG APR
Sbjct: 808 PPGGRAAPGGPPLRGGMAPRGAVPRGMAPR 837
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 342 NLDDPCMKVHCSAR-RVC*INEHGEAICNCIKECP 443
N DPC CSA C + ++ EA+C C K+CP
Sbjct: 1762 NYCDPCQNFICSAPYSSCEVKDN-EAVCECPKDCP 1795
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 32.3 bits (70), Expect = 0.19
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 345 LDDPCMKVHCSARRVC*INEHGEAICNCIKECP 443
L +PC V C + C G A+C C ECP
Sbjct: 776 LCNPCKNVECKFKARCVGLPDGSAVCECNTECP 808
Score = 31.5 bits (68), Expect = 0.32
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 345 LDDPCMKVHCSARRVC*INEHGEAICNCIKEC 440
L DPC+K+ C C + G A C C +C
Sbjct: 225 LTDPCLKISCKFHSRCVKSSGGSANCVCPSDC 256
Score = 30.3 bits (65), Expect = 0.75
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 354 PCMKVHCSARRVC*INEHGEAICNCIKEC 440
PC ++ CS C + +G+A C C ++C
Sbjct: 709 PCSRISCSHYGRCVVRNNGKAHCVCPRQC 737
>SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 325
Score = 31.9 bits (69), Expect = 0.24
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 276 EAERARVSEILNESRDAPDDEINLDDPCMKVHCSARRVC*INEHGEAICNCIKEC 440
E E + + ++ + D+ L DPC CS + +N +G A C C + C
Sbjct: 68 EVESCKTNTRISVIKKGSCDDSALSDPCDIALCSFPQSICVNVNGTATCECPRAC 122
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 31.9 bits (69), Expect = 0.24
Identities = 18/36 (50%), Positives = 18/36 (50%)
Frame = -2
Query: 282 QPPGIVSRPGYPPCRSRGAPTRRCPRGEAPRTSAAR 175
QPP SR PP SRGAP RG AP AR
Sbjct: 286 QPPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPAR 321
>SB_49635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 30.3 bits (65), Expect = 0.75
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 252 SLDERRFQEAERARVSEILNESRDAPDDEINLDDPCM 362
SLDE ++ AE +RVS I +S ++ D E D C+
Sbjct: 30 SLDEHKWMVAEMSRVSRI-QQSEESQDKETKQDQACI 65
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 30.3 bits (65), Expect = 0.75
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -2
Query: 333 RQEHRVTHSGSRRHELSQPPGIVSRPGYPPC----RSRGAPTRRCPRGEAP 193
RQ H +T+ R H LS PG +PGY P R R +P+ R PR +P
Sbjct: 1320 RQTHTITNV--RGHSLS--PGEAQKPGYSPYPEAERKRDSPSDR-PRSRSP 1365
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 29.9 bits (64), Expect = 0.99
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 345 LDDPCMKVHCSARRVC*INEHGEAICNCIKECP 443
+ DPC KV C+ C G C C + CP
Sbjct: 1535 MKDPCSKVKCAFYGQCVWYYDGRTQCECRRTCP 1567
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 166 RRLPSGRRP-RGFPAGTSPSRSTSRTAWRIAWTRDDSRRL 282
RRLPSGR P R P+G PSR + R+ R SRRL
Sbjct: 136 RRLPSGRLPSRRLPSGCLPSRRL--PSGRLPSRRLPSRRL 173
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 166 RRLPSGRRP-RGFPAGTSPSRSTSRTAWRIAWTRDDSRRL 282
RRLPS R P R P+G PSR + R+ R SRRL
Sbjct: 166 RRLPSRRLPSRRLPSGCLPSRRGQLPSRRLPSGRLPSRRL 205
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 166 RRLPSGRRPRG-FPAGTSPSR---STSRTAWRIAWTRDDSRRL 282
RRLPSGR P G P+G PSR S + R+ R SRRL
Sbjct: 293 RRLPSGRLPSGRLPSGRLPSRRLPSGRLPSGRLPSGRLPSRRL 335
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/21 (66%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 166 RRLPSGRRPRG-FPAGTSPSR 225
RRLPSGR P G P+G PSR
Sbjct: 106 RRLPSGRLPSGRLPSGQLPSR 126
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/21 (66%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 166 RRLPSGRRP-RGFPAGTSPSR 225
RRLPSGR P R P+G PSR
Sbjct: 368 RRLPSGRLPSRRLPSGRLPSR 388
Score = 27.5 bits (58), Expect = 5.3
Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +1
Query: 166 RRLPSGRRP-RGFPAGTSPS-RSTSR--TAWRIAWTRDDSRRL 282
RRLPSGR P R P+G PS R SR + R+ R SRRL
Sbjct: 16 RRLPSGRLPSRRLPSGRLPSGRLPSRRLPSRRLPSGRLPSRRL 58
Score = 27.1 bits (57), Expect = 7.0
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 166 RRLPSGRRPRG-FPAGTSPSRSTSRTAWRIAWTRDDSRRL--RELVSPR 303
RRLPSGR P G P+ PSR + R+ R SRRL R L S R
Sbjct: 56 RRLPSGRLPSGRLPSRRLPSRRL--PSRRLPSRRLPSRRLPSRRLPSGR 102
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 169 RLPSGRRPRG-FPAGTSPSRSTSRTAWRIAWTRDDSRRL 282
RLPSGR P G P+G PSR + R+ R SRRL
Sbjct: 344 RLPSGRLPSGRLPSGWLPSRRL--PSRRLPSGRLPSRRL 380
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 351 DPCMKVHCSARRVC*INEHGEAICNCIKECP 443
D C KV C C + +G A C+C CP
Sbjct: 1513 DVCSKVTCHRYAKCNNHYNGTASCSCSSRCP 1543
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 354 PCMKVHCSARRVC*INEHGEAICNCIKECP 443
PC + C + C ++ +A C C K CP
Sbjct: 1337 PCNRTQCPSYSRCVLDSSLQAKCVCTKSCP 1366
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +3
Query: 354 PCMKVHCSARRVC*INEHGEAICNCIKECP 443
PC V C C G +C C+ +CP
Sbjct: 1407 PCSTVTCLYHSKCFPQADGTGVCICLDQCP 1436
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 345 LDDPCMKVHCSARRVC*INEHGEAICNCIKECP 443
L DPC+ C C + +A C C + CP
Sbjct: 1583 LPDPCLAKRCPPYAQCVPDHVLKARCTCPERCP 1615
>SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)
Length = 217
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 348 DDPCMKVHCSARRVC*INEHGEAICNCIKECP 443
+DPC K C +C + G C C CP
Sbjct: 11 EDPCSKRVCMWGEMCRADSSGFTYCECPVSCP 42
>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
Length = 969
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 204 RGDISESEHLENGMADSLDERRFQEAERARVSEILNESRD 323
+ D E+ L+N M DSLD+ R ++ S I E RD
Sbjct: 420 KADSYENISLDNTMVDSLDDDRESVCSNSKKSAIFLEIRD 459
>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 351 DPCMKVHCSARRVC*INEHGEAICNCIKECP 443
DPCM C+A ++ G+A+C C+ CP
Sbjct: 180 DPCMTKACTAPYSKCMSVRGKAVCMCM-SCP 209
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 354 PCMKVHCSARRVC*INEHGEAICNCIKECP 443
PC CSA + GEA+C C+ CP
Sbjct: 250 PCQTSPCSAPYAKCLVVQGEAVCTCL-SCP 278
>SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)
Length = 769
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 202 PAGTSPSRSTSRTAWRIAWTR 264
P G +PS+S +R++W +W R
Sbjct: 498 PVGENPSKSRNRSSWPPSWIR 518
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 172 LPSGRRPRGFPAGTSPSRSTSRTAWRIAWTRD 267
LP RR + A P T R WR+ W ++
Sbjct: 404 LPGYRRDNAYIAAQGPLAETCRDFWRMVWEQN 435
>SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 765
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 225 EHLENGMADSLDERRFQEAERARVSEILNESRDAPDDEINLDD 353
E+L + + D Q ER R++E+ E+RD EIN D
Sbjct: 91 ENLSDRLRQKADLTLAQAIERCRMNEMRKENRDLVLGEINKSD 133
>SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26)
Length = 631
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 195 GLPRGDISESE---HLENGMADSLDERRFQEAERARVSEILNESRDAPDDEINL 347
G+P + +S+ LEN + +DE + ++ ER +V ++L ++ D + L
Sbjct: 31 GVPYPQLDQSQTILRLENDLRTKVDELKMEKHERIKVLKVLRDTERQLCDRLRL 84
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 351 DPCMKVHCSARRVC*INEHGEAICNC-IKECP 443
+PC + C+ ++ + GE +C C + ECP
Sbjct: 1864 NPCGNIKCTHKQQQCVVRSGEPMCECVVNECP 1895
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 351 DPCMKVHCSARRVC*INEHGEAICNCIKECP 443
DPC C + C + +G A C C CP
Sbjct: 1572 DPCEITLCDKGKRC-LLVNGTATCECFSACP 1601
>SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)
Length = 263
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 327 PDDEINLDDPCMKVHCSARRVC*INEHGEAICNCIK 434
P+ +++D+ CS C IN HG +C C++
Sbjct: 148 PEGCVDIDECVYPRVCSEHAKC-INTHGSYLCTCVE 182
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 134 KTSSTPSALTYDDYRAADVRGASPRGHLRVGAPRERHGG*PGRET 268
++S TP + T + R +P+G R+ PR R G GR T
Sbjct: 342 RSSFTPQSFTPQS-SISRRRSDTPKGRRRISVPRRRAGSAQGRLT 385
>SB_44864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 336 HRQEHRVTHSGSRRHELSQPPGIVSRPG 253
H +EH +TH+G + H+ Q +R G
Sbjct: 71 HLKEHLITHTGQKPHQCDQCGKCFTRSG 98
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 342 NLDDPCMKVHCSARRVC*INEHGEAICNC 428
N DD C CS C + G+A C C
Sbjct: 220 NFDDECASNPCSENATCVTSFSGKASCIC 248
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 172 LPSGRRPRGFPAGTSPS-RSTSRTAWRIAWTRDD 270
+P GRR RG G SPS RS R + RD+
Sbjct: 376 IPQGRRSRGSFRGVSPSTRSDHEDDLRELYNRDE 409
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,831,088
Number of Sequences: 59808
Number of extensions: 278489
Number of successful extensions: 941
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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