Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A12
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              30   0.010
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 30.3 bits (65), Expect = 0.010
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 351 DPCMKVHCSARRVC*INEHGE-AICNCIKECP 443
           DPC   +C   + C ++ +   A+C C+++CP
Sbjct: 80  DPCASKYCGIGKECELSPNSTIAVCVCMRKCP 111


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 15  EVAGRSFFKTTHISQVVRMKRLLVLTLVVAVICTVDAEVQKH 140
           E+   S F     + ++  KR+ VL   + V+C  D +   H
Sbjct: 135 ELYEESLFVPYITNFIIYSKRMDVLEATLRVLCMTDGKEGMH 176


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 225 EHLENGMADSLDERRFQEAERARVSEILNESRDAPDDEINL 347
           E L NG+   L  +R + ++ A  + +   +  + D  IN+
Sbjct: 830 EILANGVLSDLSIKRTERSDSALFTCVATNAFGSDDTSINM 870


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 103 ATTRVNTNSLFILTTWLICVVLKKLLPA 20
           A+  V +  LF+L     CVV+++ +P+
Sbjct: 596 ASLMVFSLGLFLLLDMFNCVVVEETIPS 623


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 175 PSGRRPRGFPAGTSPSRSTSR 237
           PS   P G P G  PS++ S+
Sbjct: 42  PSQGPPPGGPPGAPPSQNPSQ 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,500
Number of Sequences: 438
Number of extensions: 2104
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)