Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A11
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77270.1 68414.m08999 expressed protein                             31   0.40 
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    28   0.68 
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f...    29   2.8  
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    29   2.8  
At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly ...    27   6.5  
At3g14850.2 68416.m01876 expressed protein                             27   6.5  
At3g14850.1 68416.m01877 expressed protein                             27   6.5  
At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit...    27   8.6  
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR...    27   8.6  
At3g48500.1 68416.m05294 expressed protein                             27   8.6  
At2g39770.1 68415.m04883 GDP-mannose  pyrophosphorylase (GMP1) i...    27   8.6  

>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +3

Query: 63  TRYISDRRCANIRRNSAAVVMRVRKKLKTGL-RIRRQDLPQPVPLVLREGQDAQRFENRE 239
           TRY+ D +  N R + +  + R  K+LKT + R     + +  P+V  + +D QR +NRE
Sbjct: 390 TRYVRDSQEKNTRNDESQTIFRASKRLKTEIGRADHNSISKTNPVV--KTKDIQR-KNRE 446


>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 27.9 bits (59), Expect(2) = 0.68
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = +1

Query: 292 PVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGV 471
           PV G DG     +C    S     S  +   G  Q VK+ D+Q  +C +++K   G    
Sbjct: 81  PVTGKDGGDSAEECLSAISFSKKGSRYICSGGTGQIVKIWDLQRKLCIKKLK---GHTST 137

Query: 472 TYGNPCLLNCATQSNPSLSI 531
             G   + NC  +   S+S+
Sbjct: 138 ITG--VMYNCKDEHLASVSV 155



 Score = 21.4 bits (43), Expect(2) = 0.68
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +1

Query: 247 TCEEADPCVCTFIYAPVCGTD 309
           + +  DPCV ++  +P C  +
Sbjct: 27  SADSGDPCVLSYTPSPGCAVN 47


>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 144

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 115 PSSCA--CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 255
           P+SC   C R   PVCG D  TY   C      D     +++VK+G C+
Sbjct: 68  PASCPVQCFRP-DPVCGEDSVTYWCGC-----ADALCHGVRVVKQGACD 110



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 376 KHRGE-CQEVKVADIQPCICTREIKQVCGSDGVTYGNPCLLNCATQSNPSLSIEHPGPCD 552
           K+RGE C+ +      P  C R    VCG D VTY   C   CA      + +   G CD
Sbjct: 56  KNRGEFCEGIAKPASCPVQCFRP-DPVCGEDSVTYW--C--GCADALCHGVRVVKQGACD 110


>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 255
           PVCG+DG TY   C      D      ++VK+G C+
Sbjct: 53  PVCGTDGVTYWCGC-----PDAACHGARVVKKGACD 83


>At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly
           identical to SP|P15455 [Plant Mol Biol 11:805-820
           (1988)]; contains Pfam profile PF00190 Cupin and Prosite
           11-S plant seed storage proteins signature PS00305
          Length = 472

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 286 YAPVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVAD 414
           YA   G  G  +PN+C L+    L PS  +K   E   ++V D
Sbjct: 21  YAAQQGQQGQQFPNECQLDQLNALEPSHVLK--SEAGRIEVWD 61


>At3g14850.2 68416.m01876 expressed protein
          Length = 321

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 466 GVTYGNPCLLNCATQSNPSLSIEHPG 543
           GV +G P   +C  Q  P L  ++PG
Sbjct: 223 GVLWGEPAAKSCVGQKEPLLGTKYPG 248


>At3g14850.1 68416.m01877 expressed protein
          Length = 253

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 466 GVTYGNPCLLNCATQSNPSLSIEHPG 543
           GV +G P   +C  Q  P L  ++PG
Sbjct: 155 GVLWGEPAAKSCVGQKEPLLGTKYPG 180


>At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At2) / UFO-binding protein (UIP2) E3
           ubiquitin ligase; skp1b; identical to UIP2 GI:3719211
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01466: Skp1 family, dimerisation domain and
           PF03931:Skp1 family, tetramerisation domain; identical
           to cDNA UFO binding protein UIP2 mRNA, partial cds
           GI:3719210
          Length = 171

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 113 CRRHARAQET*DRSADQTARLTTTSAS 193
           C+RH  A E  + +AD  A  TTT+ +
Sbjct: 60  CKRHVEAAEKSETTADAAAATTTTTVA 86


>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1253

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 467  PSLPQTCLISRVQIHGCISATLTSW 393
            P+LPQ+  +  + +HGC+S    SW
Sbjct: 983  PALPQS--LKLLNVHGCVSLESVSW 1005


>At3g48500.1 68416.m05294 expressed protein 
          Length = 668

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 280 FIYAPVCGTDGNTYPNKCSLECSRPLAP 363
           F + P+   DG+T P++   +C RP  P
Sbjct: 354 FDFPPIFHRDGDTNPDEIRRDCGRPPEP 381


>At2g39770.1 68415.m04883 GDP-mannose  pyrophosphorylase (GMP1)
           identical to GDP-mannose pyrophosphorylase from
           Arabidopsis thaliana [GI:3598958]; updated per Conklin
           PL et al, PNAS 1999, 96(7):4198-203
          Length = 361

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 437 RVQIHGCISATLTSWHS 387
           R++ H CIS+++  WHS
Sbjct: 297 RIKKHACISSSIIGWHS 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,335,084
Number of Sequences: 28952
Number of extensions: 262628
Number of successful extensions: 802
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)