Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A09
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0256 + 21331396-21332268 33 0.17
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 31 0.69
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 29 2.8
03_04_0112 - 17375871-17376099,17377021-17377054,17377237-173774... 29 2.8
03_01_0178 + 1437263-1438017,1438754-1438858,1438950-1439072,143... 28 4.8
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112... 28 6.4
08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35... 28 6.4
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 28 6.4
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537... 28 6.4
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715 28 6.4
01_05_0026 - 17315805-17315831,17315930-17316010,17316809-173168... 28 6.4
11_04_0009 - 12132781-12133272 27 8.5
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 27 8.5
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 8.5
>02_04_0256 + 21331396-21332268
Length = 290
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 164 SESTRLPAHPGVAPLLRLIIILFDVVARLFNEHVPAVDADQENR 33
S + RL AHPG P +RLI++ D +A LF A AD + R
Sbjct: 139 SRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 126 PTAPADHHTVRCSSQALQRARTG 58
PTAP HH++ CS RA TG
Sbjct: 44 PTAPPKHHSLSCSGSQAPRATTG 66
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 357 GDKLTAAGKVNLFHNDDHDLSAKAFATKNMPSIPQ 461
GD+++AA + +DD +S K+F T MP PQ
Sbjct: 49 GDEISAAAEDENDDDDDGTVSVKSFETCAMPQEPQ 83
>03_04_0112 -
17375871-17376099,17377021-17377054,17377237-17377470,
17377636-17377705
Length = 188
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +1
Query: 4 SKMSPSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAG 147
S PS+S C F SAS AGT L S + + +S G G G
Sbjct: 97 SSSDPSFSGCTFPSSASAAGTTGL-SPGVGTGTGTLSPGGGIGTGTNG 143
>03_01_0178 +
1437263-1438017,1438754-1438858,1438950-1439072,
1439908-1440078,1440163-1440292,1440372-1440581,
1440675-1440773
Length = 530
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 126 GNSRVRRQAGALTINSDGTS--GAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLA 299
G++R +G S G+ GA + +G+ ++S LG +L AT GLA
Sbjct: 160 GSTRSTAASGMSATTSGGSERDGATPRSTASGSAGPEVSHLGWGHWFTLRELEEATDGLA 219
Query: 300 YDNVNGHG 323
+NV G G
Sbjct: 220 EENVIGEG 227
>10_08_0206 +
15809261-15809390,15810655-15810763,15811237-15811265,
15811721-15813048
Length = 531
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -1
Query: 500 VVQSATNSVEIGNLRNAG---HVLSSESLCAEVMVIIVEQVDFASGGQLV 360
+ Q A+ ++G L G H+ +S+ + A+ + ++ EQ+D+A+ L+
Sbjct: 414 ISQLASTPADVGLLTKKGILVHLENSDEMAAKKLSMLCEQIDYATEDYLI 463
>08_01_0051 -
355392-355450,355507-355634,356271-356425,356883-357012,
357600-357739,358384-358552,360286-360557
Length = 350
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 515 LVLEHVVQSATNSVEIGNLRNAGHVLSSESLCAEVMVIIV 396
L L HV+ SA + + GNL VL + L + +I+V
Sbjct: 238 LTLRHVMDSAKQATKSGNLNELSMVLLNNILSVPLGIILV 277
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 42 LVGVNSRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQAGALTINSDGTSGAIVKV 203
L G+ SR V P + ++ Y D+ EQW R R + L I+ + + G+ +V
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935
>07_03_1164 +
24451808-24451868,24452690-24452923,24453735-24453768,
24454372-24454627
Length = 194
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 16 PSYSSCLFSWSASTAGTCSLKSLATTSNSM 105
PS S C F SAS AGT + ++ T+ +M
Sbjct: 98 PSVSGCSFPASASGAGTSTTPTMGGTTGTM 127
>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
Length = 1536
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 28 SCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAGK 150
SC S S + + +CS + T +S +RSS A G AG+
Sbjct: 480 SCSSSQSLNNSQSCSSEHAKTIGSSKEDARSSTAASGIAGR 520
>01_05_0026 -
17315805-17315831,17315930-17316010,17316809-17316871,
17317542-17317620,17317711-17317928,17319688-17319879
Length = 219
Score = 27.9 bits (59), Expect = 6.4
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Frame = +2
Query: 362 QADRRWQSQPVPQ**P*PQRKGFRY*EHAQHSSSSRFQHC-----WWRIGLHVQGQD--- 517
Q + + Q QP PQ P P + HA +S HC R+G GQD
Sbjct: 31 QYNHQQQPQPPPQATPPPPQH-----HHASLASHFHLLHCRCNAAGGRLGRPAPGQDGEQ 85
Query: 518 WCISDRRTHRLPRSKRLL 571
W + D+R RS+R L
Sbjct: 86 WRVGDQRLSMSSRSRRRL 103
>11_04_0009 - 12132781-12133272
Length = 163
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 456 PQVPDFNTVGGGLDYMFKDKIGASATAAHTDFLDRNDYSLGG 581
P V DF+ G G+D M + + A+A++A + D+S GG
Sbjct: 19 PPVADFD--GEGVDGMAPEAVNATASSARLGAVASGDWSGGG 58
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 150 AGALTINSDGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 323
AG + + G V + G +NH +S +G GA TAG AY+ +N G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 316 PLTLSYANPAVAAPNFIWLVRSTEPRALSLWFSL-PVIGTLTIAPEVPSELIVRAPACRR 140
P TL +PA AA + IW +P ++ S P + APE P L A R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485
Query: 139 T 137
+
Sbjct: 486 S 486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,535,561
Number of Sequences: 37544
Number of extensions: 388289
Number of successful extensions: 1223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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