Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A09
(590 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 29 2.1
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039) 29 2.8
SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084) 29 3.8
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 28 5.0
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0) 28 6.6
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8) 27 8.7
SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05) 27 8.7
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 8.7
SB_31261| Best HMM Match : MMR_HSR1 (HMM E-Value=1.5) 27 8.7
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32) 27 8.7
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 33.5 bits (73), Expect = 0.13
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +3
Query: 105 DDQPEQWGNSRVRRQAGALTINSDGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAA 284
D++P V+ + TIN + +K + GN + L A S N K G
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707
Query: 285 TAGLAY-DNVNGHGATLTNTH-IPGFGDKLTAAGKVN 389
++Y DN+N A T+ IPG K + KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 153 PLAGAPWSCPTAPADHHTVRCSSQALQRART 61
P G WSC TA +H VR + + +R RT
Sbjct: 1363 PAQGNAWSCGTAGRNHVRVRDGTMSGKRTRT 1393
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 321 GATLTNTHIPGFGDKLTAAGKVNLFHNDDHDLSAKAFATKNMPSIPQ-VPDFNTVGGG 491
G+T T IPG G + GK ++ N H S A P VP+ T G G
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379
>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
Length = 685
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 265 WLVRSTEPRALSLWFSLPVIGTLTIAPEVPSELIV 161
W+V ++EP LS + +I T +I P P I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506
>SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)
Length = 326
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 305 VVCQSSCSGSQLHLVSEINGAKSTELVVFVASYRYLDYST*GTVRVDSESTR 150
V C +G LV+ K + + F A YRY+ GTV V S + +
Sbjct: 142 VYCDMKTNGGGWTLVTRNEPLKRSLVTTFYADYRYISTEKLGTVLVTSPAVQ 193
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -2
Query: 451 LGMFLVAKAFALRSWSSLWNRLTLPAAVSLSPKPGM*VFVRVAPCPLTLSYA 296
+ L+A +A+++ N L +PAA S PKP V V+ +P + SY+
Sbjct: 401 ISQILIAAGYAVKTSEFNPNPLRIPAAKSTPPKPAP-VQVQASPQMPSFSYS 451
>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 646
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 216 NENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNTHIPGFGDKLTAAGKVNLF 395
N H + G ++ + G T L+ + +G+G +LT++ FG K+ + K+ +
Sbjct: 429 NRTHPVKYYGPINYRTDVTSG--TTHLSVVDADGNGVSLTSSINKYFGSKIRSK-KLGII 485
Query: 396 HND 404
+ND
Sbjct: 486 YND 488
>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
Length = 245
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 19 SYSSCLFSWSASTAGTCSLKSLATTSNSMMISRS 120
+Y+S + SA+T G CS+ S TSNS S S
Sbjct: 47 TYTSDSSTTSATTIGVCSIISCTYTSNSATSSGS 80
>SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)
Length = 755
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 460 KFPISTLLVADWTTCSRT 513
+FP+ T V +W TCS+T
Sbjct: 216 RFPVPTWHVTEWDTCSKT 233
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 27.5 bits (58), Expect = 8.7
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Frame = +3
Query: 57 SRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQAGALTINSDGTSGAIVKVPITGNENHKLS 236
+R + EP ++ +DQ E +S +R +AG +D G + + T N NH
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239
Query: 237 ALGSVDLTNQMKLGAATAGLAYDNVNGHGATLT-NTHIPGFGDKLTA----AGKVNLFHN 401
+ + +K G D++ G T N H+ G ++ T G VN
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKGCVNQATCNDHLKGCVNQATCNDHLKGCVNQATC 1298
Query: 402 DDH 410
+DH
Sbjct: 1299 NDH 1301
>SB_31261| Best HMM Match : MMR_HSR1 (HMM E-Value=1.5)
Length = 188
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 9 DVTKLFLVSVLLVGVNSRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQA 152
D+T LFL L G SR L+ G+Y + D Q G + +QA
Sbjct: 111 DITTLFLSQNLFPGGKSRTALIN--GHYFVLFKDPRNQLGVRMLAQQA 156
>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
Length = 808
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 351 GFGDKLTAAGKVNLFHNDDHDLSAKAFAT 437
G D LT G VN+FHN DL++++ +T
Sbjct: 612 GLSD-LTIDGHVNIFHNQGTDLNSQSGST 639
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,591,845
Number of Sequences: 59808
Number of extensions: 412148
Number of successful extensions: 1177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -