Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A08
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   2.8  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      26   5.0  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    26   5.0  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   6.6  
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    25   8.7  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   8.7  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   8.7  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 571 FLKVFRLLIIHTECCNIISKHKLS 500
           ++ VF L+++HT+  N  +KHK++
Sbjct: 453 YILVFSLMMLHTDVFNSNNKHKMT 476


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 126 GPYPYRSVNGTNNHGYY*NFRH-HFYLLINMIIKT*KN*VCF 4
           GPY    +   +N GY+ + +H  F  L NM      N +CF
Sbjct: 359 GPYTASQIQAWSNEGYFTDAKHAAFIQLANMDEWMYPNNICF 400


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 220 IGHC-YRITCVGSLIDYTSCGVVATNDEHCHVTEIDPKKP 336
           +G C Y +   G  I +T        D H HV E+ PK+P
Sbjct: 185 LGACMYFVEMAGVNILFTG-DYSREEDRHLHVAEVPPKRP 223


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -3

Query: 201 KRYHIIDFFYVAAFLMCQFLWFLRQGPYPYRSVNGTNNHGYY*NFRHHFYLLINMI 34
           KRY  +  + +   L+C+FL F   G   + S+   +  G++ N+R  ++L +  +
Sbjct: 19  KRYDTLHVWKLIKLLICKFLLFHDFGTALFTSLVKASMLGFH-NWRRTYWLYLKKL 73


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 318 LCDVAMFVICSDNTTRSVINQASYTGN 238
           LCD A  V+C +N  + V N  +  G+
Sbjct: 44  LCDKAREVLCQENNVQPVRNPVTVCGD 70


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 174 YVAAFLMCQFLWFLRQGPYPYRSVNGTNNH 85
           YV   + C + W L + P+  RS   TN++
Sbjct: 338 YVQRLVRCDYTWHLCKSPFK-RSTGNTNDN 366


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 64  SKILIISMIVCTVNAAVWIGALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRIT 243
           S+ L +  +   +N+  +I  LP++ KE  H E   + EI   +P       I  CY+  
Sbjct: 190 SRCLTVEELHTLMNSFSFIYKLPEEEKEKVHAE---LDEIAKTIPRVQNTDQIKLCYQTM 246

Query: 244 CVGS 255
              S
Sbjct: 247 AFSS 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,133
Number of Sequences: 5004
Number of extensions: 52338
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)