Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A06
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    89   4e-19
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   4.5  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   4.5  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   5.9  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.9  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   7.9  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 88.6 bits (210), Expect = 4e-19
 Identities = 40/83 (48%), Positives = 62/83 (74%)
 Frame = +1

Query: 133 KEFNVKSMPIRTDYEVQVVRGHYKGQQVGKVLQVYRKKFVVYIERIQREKANGASVYVGI 312
           +++ ++S+P+R D ++ V+RG  KG++ GK+  VYRKKF++ IER+ REKANGAS  VGI
Sbjct: 40  EQYKIRSLPVRRDDQITVIRGSNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGI 98

Query: 313 HPSKCVIVKLKMNRDRITILDRR 381
             SK VI KL +++DR  ++ R+
Sbjct: 99  DASKVVITKLHLDKDRKDLIVRK 121



 Score = 65.3 bits (152), Expect = 5e-12
 Identities = 30/41 (73%), Positives = 36/41 (87%)
 Frame = +3

Query: 15  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQR 137
           MK+++ VTSSRRK RK HF APS +RRVLMSAPLSKELR++
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQ 41


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 24  NKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQRVQREIYAN 161
           NK+   S   N+ RHF + S I+++ M     ++   R    +Y N
Sbjct: 574 NKINNPSSTANQTRHFHSVSEIKKLPMGTDELEKSMVRPSTAMYIN 619


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 312  DTDVHTGSIGFLTLDPFDVDYKLLTV 235
            DT ++  SIG LT  P +++ KLLT+
Sbjct: 1051 DTLLYAKSIGLLTFLPNELNQKLLTL 1076


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 2   KKRLNEVQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKTKSST*NLCQSAQTTKC 181
           KKR  E+    ++ QK K+    Q P   P+ T VSTT +R +   +  N   S    + 
Sbjct: 199 KKRELELN-NTEISQKPKRSRWDQAP---PSVTQVSTTKRRSRWDKAPENFTISEHVIEN 254

Query: 182 RLYEDII 202
            + ED+I
Sbjct: 255 GISEDLI 261


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 426 VFAVLFTKSR*PATSSAIQDCYTVSIHLQL 337
           +F   FT S  P  S++I+D Y +   LQL
Sbjct: 151 IFGTSFTSSPRPPPSASIEDTYPIIHCLQL 180


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 2    KKRLNEVQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTT 115
            ++R+   Q A++  ++ ++EE  +    HP+ TY  TT
Sbjct: 957  EERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTT 994


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,819
Number of Sequences: 5004
Number of extensions: 37970
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)