Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A06
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0323 - 2459854-2460306                                          129   1e-30
01_01_0263 + 2136858-2137331                                          126   9e-30
11_01_0317 - 2365493-2365786,2365825-2365953                          110   6e-25
01_01_0381 - 2961422-2963917                                           29   1.9  
05_01_0227 - 1684597-1684727,1685003-1685100,1685176-1685270,168...    28   4.5  

>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  129 bits (312), Expect = 1e-30
 Identities = 63/105 (60%), Positives = 84/105 (80%)
 Frame = +1

Query: 136 EFNVKSMPIRTDYEVQVVRGHYKGQQVGKVLQVYRKKFVVYIERIQREKANGASVYVGIH 315
           ++NV+S+PIR D EVQVVRG YKG++ GKV+QVYR+++V+++ERI REK NG++V VGIH
Sbjct: 41  KYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIH 99

Query: 316 PSKCVIVKLKMNRDRITILDRRASGRLAALGKEHGKYTEETAATA 450
           PSK V+ KLK+++DR  ILDR+ASGR  A  K  GK+T E  A A
Sbjct: 100 PSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKFTAEDVAAA 142



 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 29/41 (70%), Positives = 32/41 (78%)
 Frame = +3

Query: 15  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQR 137
           MK N  VTSSRRK RK HF+APS +RRVLMSA LS ELR +
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHK 41


>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  126 bits (304), Expect = 9e-30
 Identities = 61/105 (58%), Positives = 83/105 (79%)
 Frame = +1

Query: 136 EFNVKSMPIRTDYEVQVVRGHYKGQQVGKVLQVYRKKFVVYIERIQREKANGASVYVGIH 315
           ++NV+S+PIR D EVQVVRG YKG++ GKV+QVYR+++V+++ERI REK NG++V VGIH
Sbjct: 41  KYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIH 99

Query: 316 PSKCVIVKLKMNRDRITILDRRASGRLAALGKEHGKYTEETAATA 450
           PSK V+ KLK+++DR  ILDR+A GR  A  K  GK+T +  A A
Sbjct: 100 PSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGKFTADDVAAA 142



 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 29/41 (70%), Positives = 32/41 (78%)
 Frame = +3

Query: 15  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQR 137
           MK N  VTSSRRK RK HF+APS +RRVLMSA LS ELR +
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHK 41


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score =  110 bits (264), Expect = 6e-25
 Identities = 60/128 (46%), Positives = 85/128 (66%), Gaps = 3/128 (2%)
 Frame = +1

Query: 76  PLLTSDEYLCQH-H--SPKS*DKEFNVKSMPIRTDYEVQVVRGHYKGQQVGKVLQVYRKK 246
           P +TS    C+  H  +P S  +     ++     ++  VVRG YKG++ GKV+QVYR++
Sbjct: 5   PRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVVRGSYKGRE-GKVVQVYRRR 63

Query: 247 FVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNRDRITILDRRASGRLAALGKEHGKY 426
           +V+++ERI REK NG++V VGIHPSK V+ KLK+++DR  ILDR+ASGR  A  K  GK+
Sbjct: 64  WVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 121

Query: 427 TEETAATA 450
           T E  A A
Sbjct: 122 TAEDVAAA 129



 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 29/41 (70%), Positives = 32/41 (78%)
 Frame = +3

Query: 15  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQR 137
           MK N  VTSSRRK RK HF+APS +RRVLMSA LS ELR +
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHK 41


>01_01_0381 - 2961422-2963917
          Length = 831

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 313 HPSKCVIVKLKMNRDRITILDRRASGRLAALGKEHGKYTEE 435
           HP+  ++   K+ RD++T L+RR   + +  G   G Y  E
Sbjct: 166 HPTDTLLPGAKLGRDKLTGLNRRLVSKKSMAGPSPGAYCFE 206


>05_01_0227 -
           1684597-1684727,1685003-1685100,1685176-1685270,
           1685360-1685545,1686185-1686298,1686583-1686684,
           1686811-1687096,1687242-1687291,1687351-1687479,
           1687590-1687724,1688163-1688165
          Length = 442

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 20  VQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKT 133
           VQ +RD  QK   E + Q   S   S Y+++T++ VKT
Sbjct: 272 VQPSRDAKQKPGPEASIQDLASRAASRYMASTVKSVKT 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,132,167
Number of Sequences: 37544
Number of extensions: 260095
Number of successful extensions: 657
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)