Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A06
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             134   3e-32
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_2578| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4)                27   6.0  
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  
SB_31028| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)                  27   7.9  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  134 bits (325), Expect = 3e-32
 Identities = 65/101 (64%), Positives = 84/101 (83%)
 Frame = +1

Query: 133 KEFNVKSMPIRTDYEVQVVRGHYKGQQVGKVLQVYRKKFVVYIERIQREKANGASVYVGI 312
           +++NV+S+P+R D EVQV RGH+K QQVGKV+QVYRKK+V++I+RIQREKANGA+V VGI
Sbjct: 40  QKYNVRSIPVRKDDEVQVTRGHFKSQQVGKVIQVYRKKWVIHIDRIQREKANGATVSVGI 99

Query: 313 HPSKCVIVKLKMNRDRITILDRRASGRLAALGKEHGKYTEE 435
           HPSK  IVKLK+++DR  ILDR+   +LA    E GK+TEE
Sbjct: 100 HPSKVEIVKLKIDKDRKKILDRKNRSKLA----EKGKHTEE 136



 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = +3

Query: 15  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQR 137
           MK N  V+SSRRK+RK HFSAPS +RR LMSAPLSKELRQ+
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQK 41


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 15  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQRVQREIYANPHRLRSA 182
           MK +  +    RK+ K H   P HIR+    + + K +R+   +   ANP  +R +
Sbjct: 1   MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRK--SKNTLANPKHIRKS 53


>SB_2578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 207 AFIMSSYNLHFVVCADWHR 151
           A +M SY +H   CAD+HR
Sbjct: 83  AIVMDSYLVHICYCADFHR 101


>SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = -1

Query: 360 TVSIHLQLHNHTL*RVDTDVHTGSIGFLTLDPFDVDYKLLTVHL*YFAHLLAFIM--SSY 187
           TV++H   H H+  RV         G +T+      Y  +TVH  +  H    ++  S Y
Sbjct: 591 TVTVHAVWHGHSSTRVIAQSQYTRYGTVTVHASYTQYSTVTVHAVWHGHSRTRVIARSQY 650

Query: 186 NLH--FVVCADWH 154
             +    V A WH
Sbjct: 651 TRYGTVTVHAVWH 663


>SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4)
          Length = 308

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 398 RLLVKSTANTQRKRLPLLWSHLTPL 472
           R+L + T  T+  R PL+ SHL PL
Sbjct: 275 RVLPRPTRQTRESRTPLVVSHLDPL 299


>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 21  YNKLVTSSRRKNRKRH 68
           YNK++ SSRR N KRH
Sbjct: 180 YNKVIGSSRRANWKRH 195


>SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 44  QKEKQEEAFQCPFSHPTSTYVSTTLQRVKTKSST 145
           Q++      QCP  +P  TY STT     TKS+T
Sbjct: 626 QRDAASALPQCPSPYPKETYESTTTD--STKSAT 657


>SB_31028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 313 HPSKCVIVKLKMNRDRITILDRRASGRLAALGKEHGKYTEETAATAMESSYTITL 477
           HP K    K  ++R    +L   A+    A GK HGK+  +  A  ++  + +TL
Sbjct: 243 HPKKAAAHKATIHRGP-NLLHHAAA---KAHGKAHGKHKRDLGAVTLDKMHEVTL 293


>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 285

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +3

Query: 57  RKRHFSAPSHIRRVL-MSAPLSKELRQRVQR----EIYANPHRLRSAGCT 191
           R  H S PSH RRVL +S P  +++     R    ++Y   HR     CT
Sbjct: 39  RVLHLSPPSHARRVLSLSPPYIQDVYFTCHRPHMQDVYFTCHRPTCKTCT 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,438
Number of Sequences: 59808
Number of extensions: 307983
Number of successful extensions: 790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)