Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A06
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   116   9e-27
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...    83   1e-16
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...    83   1e-16
U22831-9|AAN63388.1|  412|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U22831-8|AAK20070.2|  545|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF067937-3|AAF99913.2|  559|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  116 bits (279), Expect = 9e-27
 Identities = 52/98 (53%), Positives = 78/98 (79%)
 Frame = +1

Query: 145 VKSMPIRTDYEVQVVRGHYKGQQVGKVLQVYRKKFVVYIERIQREKANGASVYVGIHPSK 324
           ++++PIRTD EV V+RG +KG   G+VL+ YRKKFV++I++I REKANG++V++GIHPSK
Sbjct: 44  IRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102

Query: 325 CVIVKLKMNRDRITILDRRASGRLAALGKEHGKYTEET 438
             I KLK+++DR  +++R+A+GR    G   GK+T+ET
Sbjct: 103 VAITKLKLDKDRRALVERKAAGRSRVTGILKGKHTDET 140



 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 25/41 (60%), Positives = 31/41 (75%)
 Frame = +3

Query: 15  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQR 137
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR +
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 36/60 (60%), Positives = 52/60 (86%)
 Frame = +1

Query: 145 VKSMPIRTDYEVQVVRGHYKGQQVGKVLQVYRKKFVVYIERIQREKANGASVYVGIHPSK 324
           ++++PIRTD EV V+RG +KG   G+VL+ YRKKFV++I++I REKANG++V++GIHPSK
Sbjct: 44  IRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102



 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 25/41 (60%), Positives = 31/41 (75%)
 Frame = +3

Query: 15  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQR 137
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR +
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 36/60 (60%), Positives = 52/60 (86%)
 Frame = +1

Query: 145 VKSMPIRTDYEVQVVRGHYKGQQVGKVLQVYRKKFVVYIERIQREKANGASVYVGIHPSK 324
           ++++PIRTD EV V+RG +KG   G+VL+ YRKKFV++I++I REKANG++V++GIHPSK
Sbjct: 44  IRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102



 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 25/41 (60%), Positives = 31/41 (75%)
 Frame = +3

Query: 15  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQR 137
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR +
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41


>U22831-9|AAN63388.1|  412|Caenorhabditis elegans Hypothetical
           protein F47D12.9b protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 283 ANGASVYVGIHPSKCVIVKLKMNRDRIT 366
           A+G  VY+G+     +   L+MNRD IT
Sbjct: 251 ADGNLVYMGLRNDNVIKSDLRMNRDHIT 278


>U22831-8|AAK20070.2|  545|Caenorhabditis elegans Hypothetical
           protein F47D12.9a protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 283 ANGASVYVGIHPSKCVIVKLKMNRDRIT 366
           A+G  VY+G+     +   L+MNRD IT
Sbjct: 384 ADGNLVYMGLRNDNVIKSDLRMNRDHIT 411


>AF067937-3|AAF99913.2|  559|Caenorhabditis elegans Hypothetical
           protein F22F7.3 protein.
          Length = 559

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 142 NVKSMPIRTDYEVQVVRGHYKGQQVGKV 225
           N +++PI TDY + +   H K ++VGKV
Sbjct: 96  NKRTVPIITDYTINIHGSHIK-KKVGKV 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,155,514
Number of Sequences: 27780
Number of extensions: 225024
Number of successful extensions: 614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)