Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A06
(477 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ... 123 7e-29
At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B) 113 6e-26
At3g04830.2 68416.m00524 expressed protein 29 2.2
At3g04830.1 68416.m00523 expressed protein 29 2.2
At1g55325.1 68414.m06320 expressed protein 27 5.0
At5g62490.1 68418.m07843 ABA-responsive protein (HVA22b) identic... 27 6.6
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r... 27 6.6
>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
Length = 146
Score = 123 bits (296), Expect = 7e-29
Identities = 62/109 (56%), Positives = 86/109 (78%), Gaps = 2/109 (1%)
Frame = +1
Query: 115 SPKS*D--KEFNVKSMPIRTDYEVQVVRGHYKGQQVGKVLQVYRKKFVVYIERIQREKAN 288
SP S D +++NV+SMPIR D EVQ+VRG YKG++ GKV+QVYR+K+V++IERI REK N
Sbjct: 32 SPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVN 90
Query: 289 GASVYVGIHPSKCVIVKLKMNRDRITILDRRASGRLAALGKEHGKYTEE 435
G +V VGI PSK VI KL++++DR ++L+R+A GR AA ++ K+T E
Sbjct: 91 GTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSE 139
Score = 61.7 bits (143), Expect = 2e-10
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = +3
Query: 15 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQR 137
MKYN VTSSRRKNRK HF+A S RRV+MS+PLS +LRQ+
Sbjct: 1 MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQK 41
>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
Length = 146
Score = 113 bits (272), Expect = 6e-26
Identities = 62/117 (52%), Positives = 89/117 (76%), Gaps = 2/117 (1%)
Frame = +1
Query: 115 SPKS*D--KEFNVKSMPIRTDYEVQVVRGHYKGQQVGKVLQVYRKKFVVYIERIQREKAN 288
SP S D + NV+SMPIR D EVQVVRG +KG++ GKV+QVYR+K+V++IERI REK N
Sbjct: 32 SPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGRE-GKVMQVYRRKWVIHIERITREKVN 90
Query: 289 GASVYVGIHPSKCVIVKLKMNRDRITILDRRASGRLAALGKEHGKYTEETAATAMES 459
G++V VG++ S +I KL++++DR ++L+R+A+GR AA KE G T+ +A ME+
Sbjct: 91 GSTVNVGVNASNVMITKLRLDKDRKSLLERKANGR-AAADKEKG--TKFSAEDVMEN 144
Score = 65.3 bits (152), Expect = 2e-11
Identities = 29/41 (70%), Positives = 36/41 (87%)
Frame = +3
Query: 15 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQR 137
MK+N V+SSRRKNRK HF+APS +RRVLMS+PLSK+LR +
Sbjct: 1 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNK 41
>At3g04830.2 68416.m00524 expressed protein
Length = 299
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 253 VYIERIQREKANGASVYVGIHPSKCVIVKLKMNRDRITILDRRA----SGRLAALGKEHG 420
+ + +++ + NG G+ C++ KLK+ R I + + SG+ +ALG +
Sbjct: 8 IQLNQLENQVENGGG---GVWEYLCLVRKLKVRRSEIVLKHGLSILNDSGKRSALGPDEW 64
Query: 421 KYTEETAATAME 456
E+ A AM+
Sbjct: 65 TLYEQVAIAAMD 76
>At3g04830.1 68416.m00523 expressed protein
Length = 303
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 253 VYIERIQREKANGASVYVGIHPSKCVIVKLKMNRDRITILDRRA----SGRLAALGKEHG 420
+ + +++ + NG G+ C++ KLK+ R I + + SG+ +ALG +
Sbjct: 8 IQLNQLENQVENGGG---GVWEYLCLVRKLKVRRSEIVLKHGLSILNDSGKRSALGPDEW 64
Query: 421 KYTEETAATAME 456
E+ A AM+
Sbjct: 65 TLYEQVAIAAMD 76
>At1g55325.1 68414.m06320 expressed protein
Length = 1921
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 335 TITHFEGWIPTYTLAPLAFSRWILSM*TTNFLRYTCNTLPTC 210
++ + EG+ P +L AFS ++ FL + LPTC
Sbjct: 1731 SVNYIEGFTPVKSLGSTAFSYMMIPSPNMRFLHPSPLQLPTC 1772
>At5g62490.1 68418.m07843 ABA-responsive protein (HVA22b) identical
to AtHVA22b [Arabidopsis thaliana] GI:4884934
Length = 167
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 347 IFNFTITHFEGWIPTYTLAPLAFSRWIL 264
+F T WIP Y A LA + W++
Sbjct: 60 LFELTFFRLLEWIPLYPYAKLALTSWLV 87
>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
(API5)-related contains weak hit to Pfam profile
PF05918: Apoptosis inhibitory protein 5 (API5)
Length = 660
Score = 27.1 bits (57), Expect = 6.6
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Frame = +1
Query: 73 VPLLTSDEYLCQHHSPKS*DKEFNVKSMPIRTDYEVQ----VVRGHYKGQQVGKVLQVYR 240
+P +LC + P S D E +++ I+ ++ VV K Q VG L Y
Sbjct: 438 IPRDVVTNFLCTDYHPPSAD-EPDMERRKIKGFRKINTWKDVVEALQKQQIVGADLLNYS 496
Query: 241 KKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNRDRITILDRRASGRLAA 402
+ + + I + + SVYVG H +K KMN + + + + ++G L A
Sbjct: 497 QLMMTSGKYIYKGPMSRMSVYVGYHAVVIEQIK-KMNGEWVAVC-KMSNGTLVA 548
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,417,966
Number of Sequences: 28952
Number of extensions: 203301
Number of successful extensions: 556
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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