Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A05
         (596 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB058756-1|BAB47482.1|  708|Homo sapiens KIAA1853 protein protein.     31   4.1  
BC068483-1|AAH68483.1|  792|Homo sapiens RAD50 interactor 1 prot...    29   9.5  
AK021847-1|BAB13910.1|  416|Homo sapiens protein ( Homo sapiens ...    29   9.5  
AF317622-1|AAG42101.1|  821|Homo sapiens RAD50-interacting prote...    29   9.5  
AC073073-1|AAQ96849.1|  416|Homo sapiens unknown protein.              29   9.5  

>AB058756-1|BAB47482.1|  708|Homo sapiens KIAA1853 protein protein.
          Length = 708

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 320 PESSHYD*RHRCERRSQMHQSCP*TCSPLRHR 225
           P  SH    HRC  RSQ  +S P +C   RHR
Sbjct: 274 PRKSHRHRHHRCPSRSQSSESRPSSCES-RHR 304


>BC068483-1|AAH68483.1|  792|Homo sapiens RAD50 interactor 1
           protein.
          Length = 792

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 348 RPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNISNLKQSLI*NLXKLFKTIVLRK 515
           +  RW S P       +SLS    P L++   ++  L+Q L  +L K+F  +++ K
Sbjct: 626 KKERWLSLPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEK 681


>AK021847-1|BAB13910.1|  416|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11785 fis, clone HEMBA1006035. ).
          Length = 416

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 348 RPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNISNLKQSLI*NLXKLFKTIVLRK 515
           +  RW S P       +SLS    P L++   ++  L+Q L  +L K+F  +++ K
Sbjct: 250 KKERWLSLPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEK 305


>AF317622-1|AAG42101.1|  821|Homo sapiens RAD50-interacting protein
           1 protein.
          Length = 821

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 348 RPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNISNLKQSLI*NLXKLFKTIVLRK 515
           +  RW S P       +SLS    P L++   ++  L+Q L  +L K+F  +++ K
Sbjct: 655 KKERWLSLPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEK 710


>AC073073-1|AAQ96849.1|  416|Homo sapiens unknown protein.
          Length = 416

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 348 RPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNISNLKQSLI*NLXKLFKTIVLRK 515
           +  RW S P       +SLS    P L++   ++  L+Q L  +L K+F  +++ K
Sbjct: 250 KKERWLSLPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEK 305


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,099,280
Number of Sequences: 237096
Number of extensions: 1860599
Number of successful extensions: 3369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3369
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)