Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A05
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19130.1 68415.m02233 S-locus lectin protein kinase family pr...    29   3.1  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    24   5.4  
At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    28   5.4  
At4g00450.1 68417.m00062 expressed protein                             28   5.4  
At2g44020.1 68415.m05473 mitochondrial transcription termination...    28   5.4  
At2g02710.3 68415.m00213 PAC motif-containing protein similar to...    28   5.4  
At2g02710.2 68415.m00212 PAC motif-containing protein similar to...    28   5.4  
At2g02710.1 68415.m00211 PAC motif-containing protein similar to...    28   5.4  
At2g27700.1 68415.m03356 eukaryotic translation initiation facto...    27   9.5  

>At2g19130.1 68415.m02233 S-locus lectin protein kinase family
           protein contains Pfam domains PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 828

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +1

Query: 148 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQ-DWCICD 276
           QPR QCQ  R+       S      CRC  G     Q DW + D
Sbjct: 285 QPRQQCQVYRYCGSFGICSDKSEPFCRCPQGFRPMSQKDWDLKD 328


>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 24.2 bits (50), Expect(2) = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 130  YFTGSRHFVTKPRDMSFCEIYG-AKGTEPVIFVSSY 26
            Y TG  + V   +DMS+   YG  +G +   FV  +
Sbjct: 1006 YVTGKNNVVLSYKDMSYTNTYGLIRGLQFASFVVQF 1041



 Score = 21.8 bits (44), Expect(2) = 5.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 214  VRNLRNIWQVFSGEC 170
            + NL+ IW    G+C
Sbjct: 957  INNLQGIWDTSDGQC 971


>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 457 KLEIFGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVVITIKDIGVSG 278
           +LE+ GK+  +A F  G    +I      VE +R  +S    + S +   I I D+   G
Sbjct: 205 RLEVMGKKAKNASFISGTEAGKISKEIVKVEKRRIVKSTLCNERSSRSHCIIILDVPTVG 264

Query: 277 GR 272
           GR
Sbjct: 265 GR 266


>At4g00450.1 68417.m00062 expressed protein
          Length = 2124

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
 Frame = -2

Query: 409  GLNERRIELLPTG--VEVQRCGRSLEEIQFSPQRVVITIKDIGVSGGRRCTNLVLEHVVH 236
            G N++ +++  T   V++   G SL+++QF  +R +       V   R+      +  V 
Sbjct: 892  GENQKVVDVFRTSTPVDMVSVGNSLKQLQFVDKRSIAVWLTTAV---RQLVEEPQKSSVR 948

Query: 235  SGTDS----VEVRNLRNIWQVFSGECFGTEIVVVVMEEIYFTGSRHFVTKPRDM--SFCE 74
             G  +    VE +N    W++ + E +    ++ +  ++   G R+ VT PR++  + CE
Sbjct: 949  VGQFNRGAPVEEKNTIR-WKLGADELYSILFLLDISLDLVSAGGRNLVTVPRNVENNMCE 1007

Query: 73   I 71
            I
Sbjct: 1008 I 1008


>At2g44020.1 68415.m05473 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 507

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 387 SIRLSLSPRGNPALVSRFPNISNLKQSLI 473
           S++L + P G   +V + P I +LKQ++I
Sbjct: 332 SLKLKIDPEGFARVVEKMPQIVSLKQNVI 360


>At2g02710.3 68415.m00213 PAC motif-containing protein similar to
           nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
           contains Pfam profile PF00785: PAC motif
          Length = 358

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 14  VKVPITGNENHRLSALGSVDLTKTHIPGFG 103
           V+VPI+G E+HR       DL+    P FG
Sbjct: 137 VQVPISGREHHRKKLRNVGDLSSDTSPTFG 166


>At2g02710.2 68415.m00212 PAC motif-containing protein similar to
           nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
           contains Pfam profile PF00785: PAC motif
          Length = 397

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 14  VKVPITGNENHRLSALGSVDLTKTHIPGFG 103
           V+VPI+G E+HR       DL+    P FG
Sbjct: 137 VQVPISGREHHRKKLRNVGDLSSDTSPTFG 166


>At2g02710.1 68415.m00211 PAC motif-containing protein similar to
           nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
           contains Pfam profile PF00785: PAC motif
          Length = 399

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 14  VKVPITGNENHRLSALGSVDLTKTHIPGFG 103
           V+VPI+G E+HR       DL+    P FG
Sbjct: 137 VQVPISGREHHRKKLRNVGDLSSDTSPTFG 166


>At2g27700.1 68415.m03356 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to
           SP|P39730 Translation initiation factor IF-2
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00009: Elongation factor Tu GTP binding domain,
           PF03144: Elongation factor Tu domain 2
          Length = 479

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 98  TQGYEFL*DLRSQGH*ACDF 39
           T GYEF  +LRS+G   CDF
Sbjct: 105 TPGYEFYTNLRSRGLGLCDF 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,275,922
Number of Sequences: 28952
Number of extensions: 279685
Number of successful extensions: 638
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)