Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A04
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    67   1e-12
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   4.0  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   6.9  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    25   6.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   9.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    24   9.1  
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    24   9.1  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    24   9.1  

>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 66.9 bits (156), Expect = 1e-12
 Identities = 36/95 (37%), Positives = 54/95 (56%)
 Frame = +3

Query: 75  MSLESIKYRRGSXXXXXXXXXXXQTRYVKVQGVEDGWRVINKMQVRGAPAIAIVGCLSLA 254
           MSL++I Y               + +Y+ V  VED + VI KMQVRGAPAIAIV  LS+A
Sbjct: 1   MSLQAIIYNEDKLLVLDQLLLPYERKYISVSNVEDAFAVIKKMQVRGAPAIAIVAALSVA 60

Query: 255 IELLKDNIADKKIMRQEIEGKLNYLVSARPTAVNI 359
           + L   ++++    ++ +     +L  +RPTAVN+
Sbjct: 61  VGL--KHLSEDADAKEYVINSFEHLKQSRPTAVNL 93


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 233 YSNCWCTSNLHFVYDSPSIFNTLHFNISCL 144
           +SN WC +N   ++ +P I +++ F++  L
Sbjct: 411 FSNQWCRTNPKGLFCNPQIVHSIAFSLLLL 440


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
            family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 216  APAIAIVGCLSLAIELLKDNIADKKIMRQEIEG 314
            A A ++ G LS+  ELL     D++I+  ++EG
Sbjct: 910  AHASSVTGVLSITKELLLSVSIDQRILLWKVEG 942


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 304 SCRMIFLSAMLSFSNSIARDKQPTIA 227
           SCR I  S+++S  NS+   K+ TIA
Sbjct: 299 SCRQIKRSSVVSLCNSVFDGKKLTIA 324


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = -2

Query: 289 FLSAMLSFSNSIARDKQPTIAIAGAPLTCILFMTLHPSSTPCTLTYLVCKG---RSNWSS 119
           F SA    S   +  K P   + G P+  +L  TLH +  P   ++ +      R N   
Sbjct: 214 FSSASQPNSEGFSILKLPYNKVLGKPIEELLVKTLHDNQIPEQYSFDLLVSLMLRQNLYD 273

Query: 118 ISKLPLRYLIDSKLILSLIYIQNQ 47
           I++  L   I    + +L+Y  +Q
Sbjct: 274 INRRRLMIRIGLLALSNLVYAHSQ 297


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 289  FLSAMLSFSNSIARDKQPTIAIAGAPLTCILFMTL 185
            F +A LSFS   +R   P+I +    L  +LF T+
Sbjct: 1467 FATARLSFSLLFSRFAGPSIYLGSRTLLMLLFGTM 1501


>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -2

Query: 313 PSISCRMIFLSAMLSFSNSIARDKQPTIAIAGAPLTCILFM 191
           P+IS ++ ++   +S +      + P +  +GAP T + +M
Sbjct: 114 PNISAKLGYVMDAISLTREKLDGQVPLMGFSGAPWTIMAYM 154


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 71  KFNIYSKPDIVIYN 30
           KFN YS  DIV YN
Sbjct: 65  KFNKYSPSDIVFYN 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,730
Number of Sequences: 5004
Number of extensions: 27864
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)