Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A04
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602...    71   3e-13
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195           27   5.1  
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184...    27   5.1  
03_05_0549 - 25444234-25446792                                         27   9.0  

>11_01_0728 +
           6023361-6023495,6024880-6025212,6025306-6025361,
           6025526-6025684,6025790-6025889,6026481-6026623,
           6026728-6026833,6027139-6027277,6027363-6027631,
           6027734-6027820
          Length = 508

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = +3

Query: 78  SLESIKYRRGSXXXXXXXXXXXQTRYVKVQGVEDGWRVINKMQVRGAPAIAIVGCLSLAI 257
           +L+SI Y RGS           +  Y+ V+   DGW  I  M VRGAPAIAI   L+LA+
Sbjct: 140 ALQSIVYHRGSLRLLDQRKLPLEVDYIDVKCSGDGWNAIRDMVVRGAPAIAIAAALALAV 199

Query: 258 EL--LKDNIADKKIMRQEIEGKLNYLVSARPTAVNI 359
           E+  L+D           +  KL YLVS+RPTAVN+
Sbjct: 200 EVSGLEDFTGTPAEAAVFVSEKLEYLVSSRPTAVNL 235


>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
          Length = 767

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 243 LSLAIELLKDNIADKKIMRQEIEGKLNYLVS 335
           L LAI  +   +ADK   R+E E  LNY+VS
Sbjct: 374 LPLAIITIASLLADKPRTREEWERVLNYIVS 404


>03_06_0508 +
           34417540-34417649,34418239-34418338,34418445-34418478,
           34418559-34418635,34418929-34419005,34419060-34419224,
           34419306-34419420,34419546-34419650
          Length = 260

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 147 TRYVKVQGVEDGWRVINKMQVRGAPAIA 230
           TRYV+  GV  GW ++ K+  RGA  +A
Sbjct: 146 TRYVQNGGVH-GWNLMRKLTSRGANVLA 172


>03_05_0549 - 25444234-25446792
          Length = 852

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 313 PSISCRMIFLSAMLSFSNSIARDKQPTIAIAGAPLTCILFM 191
           P+I CR++ + A L+ S +   D    +  +GA ++ I F+
Sbjct: 460 PAIGCRLLSVLAGLTSSRATVADVVAAVKSSGATISLIQFI 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,412,853
Number of Sequences: 37544
Number of extensions: 156980
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)