Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A04
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical pr...    69   1e-12
Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    27   8.1  

>Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical
           protein C01G10.9 protein.
          Length = 366

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 36/94 (38%), Positives = 58/94 (61%)
 Frame = +3

Query: 81  LESIKYRRGSXXXXXXXXXXXQTRYVKVQGVEDGWRVINKMQVRGAPAIAIVGCLSLAIE 260
           L+S+K+   +           + +Y+ V+GV D + VI  MQVRGAP IA+VG L L +E
Sbjct: 25  LDSLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLE 84

Query: 261 LLKDNIADKKIMRQEIEGKLNYLVSARPTAVNIK 362
           + K +  D + + Q    K+N+L+S+RPTAV+++
Sbjct: 85  IQKASELDSESIIQ----KINFLISSRPTAVDLR 114


>Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical
           protein W07A8.5 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -2

Query: 322 LSLPSIS-CRMIFLSAMLSFSNSIARDKQPTIAIAGAPLTCI 200
           L +P  S C + FL++ L F    A DK P      A   CI
Sbjct: 143 LLIPYFSDCSVNFLASSLEFQTDCAPDKHPVTRFTNANAICI 184


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = -2

Query: 208  TCILFMTLHPSSTPCTLTYLVCKGRSNW-SSISKLP 104
            TC+   T      PC LT  +C G S     I K P
Sbjct: 1475 TCVSINTYSSPGDPCDLTNTICTGNSQCIDGICKCP 1510


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,755,584
Number of Sequences: 27780
Number of extensions: 157251
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)