Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A04
         (443 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 169 PCTLTY-LVCKGRSNWSSISKLPLRYLIDSKLILSLIY 59
           P T+ Y   C+GR+    I K+   +   S LIL+++Y
Sbjct: 341 PATVQYDTCCQGRATAIYIDKVSRFFFPFSFLILNVVY 378


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 53  KPDIVIYNH*KTTYERR 3
           KPDIV++N+    YE R
Sbjct: 110 KPDIVLFNNADGNYEVR 126


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 53  KPDIVIYNH*KTTYE 9
           +PDIV+YN+    YE
Sbjct: 112 RPDIVLYNNADGNYE 126


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 50  PDIVIYNH*KTTYE 9
           PDIV+YN+    YE
Sbjct: 105 PDIVLYNNADGNYE 118


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 50  PDIVIYNH*KTTYE 9
           PDIV+YN+    YE
Sbjct: 118 PDIVLYNNADGNYE 131


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 145 CKGRSNWSSISKLPLRYL 92
           C GR  WS +     RY+
Sbjct: 126 CIGRIQWSKLQVFDCRYV 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,698
Number of Sequences: 438
Number of extensions: 1689
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)