Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A03
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    28   0.95 
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    27   1.7  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   2.2  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   3.8  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   6.7  

>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 22  CRNXGTRQRIRTDPFDPDEFVERMVRRSMQESRL-KDDQFDPEMIHDIFTQAIQDLKVLQ 198
           C+N   +  I T+    D   +   ++   E+ L KD+ F  EM+H I +  +Q   +L 
Sbjct: 157 CKNLLDKLSIWTETDMSDRVTDAFKQKMQFEAELLKDESFGNEMLHAIGSTYVQRANILI 216

Query: 199 ERQ 207
           + Q
Sbjct: 217 QSQ 219


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 148 MIHDIFTQAIQDLKVLQERQERKCARLEQAVQE 246
           M+ ++ T+    L +L ER+ER  ARL+QA+ E
Sbjct: 353 MVEELLTRKKSFLHLL-ERRERHAARLQQAIGE 384


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/66 (15%), Positives = 38/66 (57%)
 Frame = +1

Query: 97  RRSMQESRLKDDQFDPEMIHDIFTQAIQDLKVLQERQERKCARLEQAVQEEEKLYEAKLT 276
           + +++E     +++  E++ +   Q + DL++  +  +  C ++E+ +Q   + +E+++ 
Sbjct: 644 KTNLEEQTQLAEKYHEELLDN--QQKLYDLRIELDYTKSNCKQMEEEMQVLREGHESEIK 701

Query: 277 EIMDQH 294
           + +++H
Sbjct: 702 DFIEEH 707


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 110  KNHD*R-MINLILK*YMTYLHRQYR 181
            +NHD   M+NLILK Y++ ++ Q+R
Sbjct: 1164 RNHDPYLMLNLILKHYLSMIYLQFR 1188


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +1

Query: 121 LKDDQFDPEMIHDIFTQAIQDLKVLQERQERKCARLEQAV---QEEEKLYEAKLTEI 282
           L+ + F  E  H+++     +LK+   + ER+ A+LEQ++   Q   ++ E  L E+
Sbjct: 31  LQYEAFKNERDHNLWEIERAELKIRVAQLERERAKLEQSLSFQQRRAEMLEKSLREL 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,601
Number of Sequences: 5004
Number of extensions: 41692
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)