Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A03
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763... 56 2e-08
02_02_0210 + 7873962-7874753 31 0.56
02_02_0209 + 7866348-7867139 31 0.56
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066... 30 1.3
04_04_1292 - 32413046-32413807,32413901-32413936,32414037-324141... 29 3.0
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 3.0
12_02_0937 - 24568475-24569145,24569215-24569319,24569419-245699... 29 4.0
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184... 29 4.0
08_02_1136 - 24614236-24615207 28 5.2
12_02_0936 + 24565124-24565232,24565869-24565886,24565988-24566754 27 9.2
10_08_0505 + 18384392-18384454,18384593-18384679,18385878-183864... 27 9.2
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 27 9.2
>12_01_0826 -
7629892-7629964,7630052-7630135,7630216-7630314,
7630391-7630449,7630804-7630888,7630961-7631058,
7631209-7631355,7631433-7631525,7631642-7631770,
7631859-7631912,7632133-7632309,7632396-7632481,
7634234-7634324,7634433-7634531,7634618-7634694,
7634784-7634952,7639551-7639642,7639712-7639825,
7640933-7641038,7641133-7641183,7641315-7641416,
7642581-7642655,7642768-7642965,7642998-7643123
Length = 827
Score = 56.4 bits (130), Expect = 2e-08
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Frame = +1
Query: 160 IFTQAIQDLKVLQERQERKCARLEQAVQEEEKLYEAKLTEIMDQHMHCVGVFSSLDERMS 339
+F + ++L L+ + +++ L++ V ++ + L E+ F+ LD R+S
Sbjct: 94 LFKHSCKELVDLRRQIDKRLQNLKKEVATQDAKHRKTLGELEKGVDGLFDSFARLDSRIS 153
Query: 340 RCGGRALDVGEKLGXXXXXXXXXXXXXDLLSHLAHFLS-PGPV--LTDLFSDSNKLYEAA 510
G A +G+ L DL+ +L F S PG + L+ LFSD +++ EAA
Sbjct: 154 SVGQTAAKIGDHLQSAESQRETASQTIDLIKYLMEFNSTPGDLMELSPLFSDDSRVAEAA 213
Query: 511 DVIQKLHTIAQE 546
+ QKL + A+E
Sbjct: 214 SIAQKLRSFAEE 225
>02_02_0210 + 7873962-7874753
Length = 263
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 339 TVWR*GTRCWRKTWCSKSTQS*G 407
T W RCWR+ WCS +T G
Sbjct: 43 TAWNTPLRCWRRWWCSGATSRRG 65
>02_02_0209 + 7866348-7867139
Length = 263
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 339 TVWR*GTRCWRKTWCSKSTQS*G 407
T W RCWR+ WCS +T G
Sbjct: 43 TAWNTPLRCWRRWWCSGATSRRG 65
>06_03_0627 +
22903346-22903523,22906010-22906152,22906235-22906618,
22906980-22907069,22907147-22907320,22907414-22907551,
22907719-22907856,22907958-22908019,22908240-22908513
Length = 526
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 265 AKLTEIMDQHMHCVGVFSSLDERMSRCGGRALDVGEKLG 381
AK E++++H + SLD RA+DVGE +G
Sbjct: 114 AKYAEVVERHADELAALESLDAGKPLAAARAVDVGECVG 152
>04_04_1292 -
32413046-32413807,32413901-32413936,32414037-32414179,
32414263-32414419,32414518-32414679,32414860-32415107,
32415589-32415733
Length = 550
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 157 DIFTQAIQDLKVLQERQERKCARLEQAVQEEEKLYEAKLTEI 282
D T+ I+ LKV++ + + L++A+QE+E E T++
Sbjct: 255 DSMTECIEKLKVVEANRATVVSELKEALQEQESELEKVRTQL 296
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/88 (25%), Positives = 42/88 (47%)
Frame = +1
Query: 82 VERMVRRSMQESRLKDDQFDPEMIHDIFTQAIQDLKVLQERQERKCARLEQAVQEEEKLY 261
V++M+ R+ Q+ RLKDD + D Q+L+ + +E+ L++ V+E E
Sbjct: 711 VKQMLERAKQDIRLKDDSL--RKLED----NCQNLENKAKGKEQFYKNLQEKVKELESQL 764
Query: 262 EAKLTEIMDQHMHCVGVFSSLDERMSRC 345
++K+ + +F L E+ C
Sbjct: 765 DSKMHSQITSEKQQNELFGKLKEKEEMC 792
>12_02_0937 -
24568475-24569145,24569215-24569319,24569419-24569991,
24570480-24570780,24570867-24572039,24572260-24572328
Length = 963
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 187 KVLQERQERKCARLEQAVQEEEKLYEAKLTEIMDQH 294
+ ++E +R+C+R Q ++ E + +AKL ++ D +
Sbjct: 851 RAVEEGNKRECSRQAQKIKAEIAMLQAKLQQVEDDY 886
>10_08_0364 +
17217631-17217833,17218134-17218308,17218391-17218474,
17218561-17218802,17218883-17219108,17219246-17219325,
17219408-17219492,17219665-17219796,17219927-17220040,
17220123-17220170,17220413-17220497,17220722-17220834
Length = 528
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Frame = +1
Query: 178 QDLKVLQERQERKCA---RLEQA-VQEEE-----KLYEAKLTEIMDQHMHCVGV 312
+ +K LQ+R+ER+C+ +L A V EEE K +E K TE M H + V
Sbjct: 57 EQMKNLQDRKERRCSLEKKLADANVSEEEQHNIVKQFEKKETEYMRMQRHKMSV 110
>08_02_1136 - 24614236-24615207
Length = 323
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 136 FDPEMIHDIFTQAIQDLKVLQERQERKCARLEQAVQEEEKLYEAKLT 276
FDPE++ F QA++ L +ER K A EEE+ EA T
Sbjct: 260 FDPELVAQ-FEQAMERLSEDEERVLEKILEAMGAAAEEEEEEEATAT 305
>12_02_0936 + 24565124-24565232,24565869-24565886,24565988-24566754
Length = 297
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 187 KVLQERQERKCARLEQAVQEEEKLYEAKLTEIMDQH 294
+ ++E +R+C+R + V+ E + +A+L ++ D H
Sbjct: 216 QAVEEGNKRECSRQARKVRAEIAVLQARLQQVEDAH 251
>10_08_0505 +
18384392-18384454,18384593-18384679,18385878-18386409,
18387042-18387564,18387734-18387791
Length = 420
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 427 LSHLAHFLSPGPVLTDLFSD---SNKLYEAADVIQKLHTIAQELPP 555
++HL HFL +L DL S S +L + +T+A +PP
Sbjct: 194 VNHLGHFLLARELLADLTSSDYPSKRLIIVGSITGNTNTLAGNVPP 239
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.5 bits (58), Expect = 9.2
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 1/149 (0%)
Frame = +1
Query: 169 QAIQDLKVLQERQERKCARLEQAVQEEEKLYEAKLTEIMDQHMHCVGVFSSLDERMSRCG 348
Q +QD+ +QER+ K A E QE EK+ + LT ++ + ++ +
Sbjct: 958 QRMQDVTAMQERESAKKAVEEALEQEREKI--SSLTSEIEGLKALLVAEQEENDLTKKAH 1015
Query: 349 GRALDVGEKLG-XXXXXXXXXXXXXDLLSHLAHFLSPGPVLTDLFSDSNKLYEAADVIQK 525
A + E+L D + L + L L ++ + EA+ VI +
Sbjct: 1016 ANAQERNEELSKEVEDADGKIKQLSDTVQRLEETIQEREAL--LLAERQEKEEASAVIAE 1073
Query: 526 LHTIAQELPPDKFEVAKKKIEAXYDEIER 612
E K E A+K+I+ + ++R
Sbjct: 1074 SQA-RNEAFASKLEDAEKQIDLLQETVQR 1101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,232,319
Number of Sequences: 37544
Number of extensions: 272608
Number of successful extensions: 651
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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