Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A03
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12370.1 68418.m01455 exocyst complex component Sec10-related...    60   9e-10
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T...    30   1.1  
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    30   1.4  
At3g44790.1 68416.m04823 meprin and TRAF homology domain-contain...    29   1.9  
At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    29   2.5  
At5g55220.1 68418.m06883 trigger factor type chaperone family pr...    29   3.3  
At2g20470.1 68415.m02390 protein kinase, putative contains prote...    28   5.8  
At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putati...    28   5.8  
At5g60030.1 68418.m07527 expressed protein                             27   7.7  

>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
           low similarity to SP|O00471 Exocyst complex component
           Sec10 (hSec10) {Homo sapiens}
          Length = 858

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
 Frame = +1

Query: 109 QESRLKDDQFDPEM--IHDIFTQAIQDLKVLQERQERKCARLEQAVQEEEKLYEAKLTEI 282
           Q + L    F PE+  +  +F  A ++L  L+++ + +   L++ V  ++  +   LTE 
Sbjct: 76  QSAPLSSAPFFPEVDGLLSLFKDACKELVDLRKQVDGRLNTLKKEVSTQDSKHRKTLTEG 135

Query: 283 MDQHMHCVGVFSSLDERMSRCGGRALDVGEKLGXXXXXXXXXXXXXDLLSHLAHFL-SPG 459
           +D        F+ LD R+S  G  A  +G+ L              DL+ +L  F  SPG
Sbjct: 136 VDGLFES---FARLDGRISSVGQTAAKIGDHLQSADAQRETASQTIDLIKYLMEFNGSPG 192

Query: 460 PV--LTDLFSDSNKLYEAADVIQKLHTIAQE 546
            +  L+ LFSD +++ EAA + QKL + A+E
Sbjct: 193 DLMELSALFSDDSRVAEAASIAQKLRSFAEE 223


>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
           (TITAN3) very strong similarity to SMC2-like condensin
           (TITAN3) [Arabidopsis thaliana] GI:14279543; contains
           Pfam profiles PF02483: SMC family C-terminal domain,
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1175

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +1

Query: 109 QESRLKDDQFDPEMIHDIFTQAIQDLKVLQERQERKCARLEQAVQEEEKLYEAKLTEIMD 288
           +E RLKD + + + I      A +DLK   E ++ K    E+A+++E+   E+ LT +  
Sbjct: 785 REGRLKDLEKNIKTIKAQMQAASKDLK-SHENEKEKLVMEEEAMKQEQSSLESHLTSLET 843

Query: 289 Q 291
           Q
Sbjct: 844 Q 844


>At2g33240.1 68415.m04072 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin my5A
            (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 109  QESRLKDDQFDPEMIHDIFTQAIQDLKVLQERQERKCARLEQAVQEEEKLYEAKLTEIMD 288
            +E   +D   D EM + +  +  +DL  L +  ERK    E+  +E  KL E +L +++D
Sbjct: 1131 EEILAEDFSIDDEMTNKLAAEN-KDLYDLVDLLERKIDETEKKYEEASKLCEERLKQVVD 1189


>At3g44790.1 68416.m04823 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 324

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = +1

Query: 82  VERMVRRSMQESRLKDDQFDPEMIHDIFTQAIQDLKVLQERQERKCARLEQAVQEEE 252
           +E +  + M+E   K    + E    IF Q   D++   E++++KC+ +E  +++E+
Sbjct: 250 LEEVKEKKMEEQIGKSRMQELEEELKIFKQKCSDIEAQLEKEKQKCSDIEALLEKEK 306


>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 163 FTQAIQDLKVLQERQERKCARLEQAVQE-EEKLYEAK 270
           F+++I DL+++ E  ERK A+  ++ Q+  EKL   K
Sbjct: 869 FSESIDDLRMMYESLERKIAKKRKSYQDHREKLMACK 905


>At5g55220.1 68418.m06883 trigger factor type chaperone family
           protein contains Pfam profiles PF05697: Bacterial
           trigger factor protein (TF), PF05698: Bacterial trigger
           factor protein (TF) C-terminus, PF00254: peptidyl-prolyl
           cis-trans isomerase, FKBP-type
          Length = 547

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 64  FDPDEFVERMVRRSMQESRLKDDQFDPEMIHDIFTQAIQDLKVLQERQER 213
           F  DE V+  V  S+ E +    +FD E + D   + ++  KVL+  ++R
Sbjct: 491 FSTDELVKE-VENSISEFKKHKQEFDEERVKDQVQEILEGAKVLEWLKDR 539


>At2g20470.1 68415.m02390 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 596

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
 Frame = +1

Query: 178 QDLKVLQERQERKCARLEQA-----VQEEE-----KLYEAKLTEIMDQHMHCVGV 312
           + +K+LQER+ER+ + LEQ      V EE+     K  E K TE M    H +GV
Sbjct: 68  EQMKILQERKERR-SMLEQKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKLGV 121


>At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putative
           / PEP carboxylase, putative (PPC1) strong similarity to
           SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
           (PEPCASE) {Solanum tuberosum}; contains Pfam profile
           PF00311: phosphoenolpyruvate carboxylase
          Length = 967

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +1

Query: 481 SDSNKLYEAADVIQKLHTIAQELPPDKF 564
           SD  K  E ADV+   H IA ELP D F
Sbjct: 499 SDLPKTEEIADVLDTFHVIA-ELPADSF 525


>At5g60030.1 68418.m07527 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/69 (20%), Positives = 38/69 (55%)
 Frame = +1

Query: 82  VERMVRRSMQESRLKDDQFDPEMIHDIFTQAIQDLKVLQERQERKCARLEQAVQEEEKLY 261
           VE +  R   E ++K  + D +++ +   + ++  +  +ER+ERK  + ++   ++E + 
Sbjct: 107 VESVYGRERDEKKMKKSK-DADVVDEKVNEKLEAEQRSEERRERKKEKKKKKNNKDEDVV 165

Query: 262 EAKLTEIMD 288
           + K+ E ++
Sbjct: 166 DEKVKEKLE 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,278,801
Number of Sequences: 28952
Number of extensions: 224923
Number of successful extensions: 694
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)