Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A02
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    28   0.82 
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    27   2.5  
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   3.3  
SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.4  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    25   5.8  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   7.6  

>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 140 GNEVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRL-MHVYAEKSKESAT 295
           GN+ D  +   ++  +I Q    +A +TF P LEEQ    + VYA+K  E  T
Sbjct: 116 GNKEDELRVQKEIQALIRQ---ITATVTFLPQLEEQCTFNVLVYADKDSEVPT 165


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 366 PSFGRSTSYCTTN*PKTPSPAFSPVADSFDFSAYTC 259
           P F RST YCT       +P F    D  +   + C
Sbjct: 445 PRFARSTPYCTDIAKSMEAPIFHVNGDDVEAVTFIC 480


>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -2

Query: 300 SPVADSFDFSAYTCINRFCSSKSGENVMTAEVPSL*MITFDI*ASSFVA-STSFPVLISG 124
           SP  D+F    Y  + RF  S     +M A+  +     +D+ A  + A    FP+ ++ 
Sbjct: 87  SPDNDAFIKRKYATVQRFRMSSMRMGLMMAQQGTTMPAKYDVPAEEYGAFGGGFPIKLTS 146

Query: 123 TRNSEIFAVSLICTVT 76
                +F +S+   +T
Sbjct: 147 GIQIGVFCISVRFLIT 162


>SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 171 ASSFVASTSFPVLISGTRNSEIFAVSLICTVTVNLG 64
           AS F  STS    + GT+N   F  S +   T ++G
Sbjct: 24  ASRFSFSTSVASRVDGTKNGWSFTASNVADQTTDIG 59


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 149 VDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRLMHVYAEKSKESATGENAGEGV 319
           V+ATK +  ++NV+       A+     D++  KRL  +  EK   S   E A E V
Sbjct: 108 VEATKGNPNIANVVYDEHYVYALTPGREDMKNVKRLAEI-GEKVDFSMPCEEAIEKV 163


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 428 NKYVVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFS 547
           N Y + V+D       +  E LKE   +  N    GDY S
Sbjct: 307 NNYGLVVIDGDNVTISKNYETLKEKYASAANYTGDGDYSS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,201
Number of Sequences: 5004
Number of extensions: 47228
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)