Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A02
(562 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy cha... 49 2e-06
At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger) fa... 42 4e-04
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa... 40 9e-04
At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger) fa... 38 0.003
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa... 38 0.003
At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa... 38 0.005
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa... 38 0.005
At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy cha... 37 0.008
At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li... 32 0.23
At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD, chlor... 31 0.53
At5g53930.1 68418.m06710 expressed protein 29 2.8
At4g05145.1 68417.m00771 hypothetical protein 29 2.8
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 29 2.8
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont... 28 3.7
At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote... 27 6.5
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 27 6.5
At4g14030.1 68417.m02168 selenium-binding protein, putative cont... 27 6.5
At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /... 27 6.5
At3g20290.1 68416.m02571 calcium-binding EF hand family protein ... 27 8.6
>At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy
chain-related similar to SP|Q61704 Inter-alpha-trypsin
inhibitor heavy chain H3 precursor {Mus musculus};
contains Pfam profile PF00092: von Willebrand factor
type A domain
Length = 754
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/41 (53%), Positives = 32/41 (78%)
Frame = +2
Query: 437 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDF 559
VVFV+D S SM+G+ +E +K A+ T L++L+PGD F+II F
Sbjct: 329 VVFVVDISKSMTGKPLEDVKNAISTALSKLDPGDSFNIITF 369
>At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P97280
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
{Mesocricetus auratus}; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 704
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +2
Query: 437 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDF 559
+V VLD SGSM+G K+ LK AM ++ L P D S+I F
Sbjct: 253 LVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPFDRLSVISF 293
>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 641
Score = 40.3 bits (90), Expect = 9e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 437 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDF 559
++ VLD SGSM G KME +K AM ++ L D S+I F
Sbjct: 205 LITVLDVSGSMDGVKMELMKNAMSFVIQNLGETDRLSVISF 245
>At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger)
family protein very low similarity to SP|P97280
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
{Mesocricetus auratus}; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 692
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 437 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDF 559
+V VLD SGSM+G K+ LK AM ++ L D S+I F
Sbjct: 254 LVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAF 294
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 683
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +2
Query: 437 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDF 559
+V VLD SG SG K+E LK+ M +L+ L D SII F
Sbjct: 303 LVAVLDVSGRNSGGKLEMLKQTMRIVLSNLREMDRLSIIAF 343
>At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 676
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +2
Query: 437 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDF 559
+V VLD SGSM G K+ LK AM ++ L D S+I F
Sbjct: 245 LVTVLDISGSMGGTKLALLKRAMGFVIQNLGSSDRLSVIAF 285
>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 675
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +2
Query: 437 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDF 559
+V VLD SGSM G K+ LK AM ++ L D S+I F
Sbjct: 244 LVTVLDISGSMGGTKLALLKRAMGFVIQNLGSSDRLSVIAF 284
>At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy
chain-related low similarity to Inter-alpha-inhibitor H4
heavy chain [Rattus norvegicus] GI:2292988; contains
Pfam profile PF00092: von Willebrand factor type A
domain
Length = 758
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +2
Query: 437 VVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFSIIDF 559
VVFV+D S SM + +E +K+A+ L +L D F+II F
Sbjct: 329 VVFVIDISASMKWKPLEDVKKALLECLAKLQAEDVFNIIAF 369
>At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 327
Score = 32.3 bits (70), Expect = 0.23
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 131 IRTGNEVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRL--MHVYAEKSKESATGEN 304
I++G+++DA DD QM + + S + + +LE + +L +H Y EK +E T
Sbjct: 37 IQSGSDIDARSDDPQMCGLYV-----SDIYEYLRELEVKPKLRPLHDYIEKIQEDITPSK 91
Query: 305 AGEGVLGQFVVQ 340
GVL ++V+
Sbjct: 92 --RGVLVDWLVE 101
>At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative (CHLD) similar to Mg-chelatase SP|O24133 from
Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum
sativum]
Length = 760
Score = 31.1 bits (67), Expect = 0.53
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 437 VVFVLDTSGSMSGRKMEQLKEAMYTILNE-LNPGDYFSIIDF 559
V+FV+D SGSM+ +M+ K A +L E D SII F
Sbjct: 559 VIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPF 600
>At5g53930.1 68418.m06710 expressed protein
Length = 529
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +2
Query: 89 IKETANISELRVPEIRTGN--EVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRLMH 262
+ + + I++ V + G ++++ K ++Q +++ Q+ SAV S DLE ++++H
Sbjct: 295 VTQKSGIAKKEVSSVSEGEPMQIESEKVESQDHDLMEQKLCDSAV---SKDLENSEKILH 351
Query: 263 VYAEKSKESATGENAGE 313
V K +A +A +
Sbjct: 352 VINVKESGTALANSASQ 368
>At4g05145.1 68417.m00771 hypothetical protein
Length = 219
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -1
Query: 277 FLRIYVHQSFLLF*IWRERNDRR 209
FLR YV Q+ ++ +WRERN RR
Sbjct: 152 FLRRYVFQA-TIYIVWRERNGRR 173
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = +2
Query: 74 TVTVHIKETANISELRVPEIRTGNE-----VDATKDDAQMSNVIIQREGTSAVITF-SPD 235
TV + ET SE +V ++R E V+A +D N++I +G +TF S D
Sbjct: 36 TVEENADETQKKSEKKVKKVRGKIEEEEEKVEAMEDGEDEKNIVIVGKGIMTNVTFDSLD 95
Query: 236 LEEQ 247
L EQ
Sbjct: 96 LSEQ 99
>At5g10660.1 68418.m01234 calmodulin-binding protein-related
contains weak similarity to calmodulin-binding proteins
Length = 407
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/87 (21%), Positives = 30/87 (34%)
Frame = +2
Query: 53 GSLVPKFTVTVHIKETANISELRVPEIRTGNEVDATKDDAQMSNVIIQREGTSAVITFSP 232
G L+ + T I+E + EV DD + S + + +
Sbjct: 257 GELIDEDKSTEQIEEPKEPENIEENNSEEEEEVKKKSDDEENSETVATTTDMNEAVNVEE 316
Query: 233 DLEEQKRLMHVYAEKSKESATGENAGE 313
EE+K V E+ + SA E E
Sbjct: 317 SKEEEKEEAEVKEEEGESSAAKEETTE 343
>At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 559
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 393 KYPSFTRICPSFGRSTSYCTTN*PKTPSPAFSPVADSFDFSA 268
K FT S S++ +TN P P F P +D FD+ A
Sbjct: 42 KSSRFTTAVSSPPSSSAATSTNSPPEPEALFEPGSDKFDWYA 83
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 393 KYPSFTRICPSFGRSTSYCTTN*PKTPSPAFSPVADSFDFSA 268
K FT S S++ +TN P P F P +D FD+ A
Sbjct: 42 KSSRFTTAVSSPPSSSAATSTNSPPEPEALFEPGSDKFDWYA 83
>At4g14030.1 68417.m02168 selenium-binding protein, putative
contains Pfam profile PF05694: 56kDa selenium binding
protein (SBP56); identical to Putative selenium-binding
protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
similar to selenium binding protein (GI:15485232)
[Arabidopsis thaliana]; identical to cDNA from partial
mRNA for selenium binding protein (sbp gene) GI:15485231
Length = 490
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 323 GQFVVQYDVDRPKDGQILVNDGYFVHF-FAPDLPPL 427
G ++Q DVD K G + +N +FV F PD P L
Sbjct: 439 GSHIIQIDVDTEKGG-LTINPDFFVDFGDEPDGPSL 473
>At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 417
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 371 FVHLSVDLHHIVQQIDLKHLLPHFP 297
FV +SVD + +V Q +L H++ H P
Sbjct: 166 FVSISVDDYPLVTQDELLHIMSHLP 190
>At3g20290.1 68416.m02571 calcium-binding EF hand family protein
similar to EH-domain containing protein 1 from {Mus
musculus} SP|Q9WVK4 and {Homo sapiens} SP|Q9H4M9,
receptor-mediated endocytosis 1 from [Caenorhabditis
elegans] GI:13487775, GI:13487777, GI:13487779; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 545
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +2
Query: 335 VQYDVDRPKDGQILVNDGYFVHFFAPDLP-PLNKYVVFVLDTSGSMSGRKMEQLKEAMYT 511
V D P G + F +P PL ++V FV DT G +SG K + +T
Sbjct: 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHVTFV-DTPGVLSGEKQRTQRAYDFT 311
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,893,185
Number of Sequences: 28952
Number of extensions: 245469
Number of successful extensions: 729
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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