Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A01
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   3e-15
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              79   3e-15
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              71   9e-13
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              49   3e-06
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        38   0.006
SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)          28   4.8  
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)                 28   4.8  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
 Frame = +1

Query: 115 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 294
           +CY+ + +  R    + LP D++P L  CTH++Y  A I   T K+ +   N D      
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD-----R 453

Query: 295 NYRAITNLKRQFPQLRVFLTVGGDDDTEDP-QKYNLLLESPQARTAFTNSALLLAEQYGF 471
            Y+ I +LK + P L+  L VGG +    P   ++ ++ S   RT F +S L L+++Y F
Sbjct: 454 LYKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDF 513

Query: 472 DGIDLSWQLP 501
           DG DL W+ P
Sbjct: 514 DGFDLDWEYP 523


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 44/142 (30%), Positives = 69/142 (48%)
 Frame = +1

Query: 118 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHAN 297
           CYY + S  R       P D++P L  CTH+L+  A +   T+K+    EN      H  
Sbjct: 25  CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77

Query: 298 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 477
           Y+ I  LK+  P+L+  + VGG    E    ++ ++ + + R  F  SA+     +GFDG
Sbjct: 78  YQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDG 137

Query: 478 IDLSWQLPKRKPKKIRSSIGSF 543
           +DL W+ P  +    +S  G F
Sbjct: 138 LDLDWEYPGMRGGSPKSDKGRF 159



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 42/143 (29%), Positives = 69/143 (48%)
 Frame = +1

Query: 115 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 294
           +CYY + S  R       P D++P L  CTH+++  + +   T+ M    +N D D    
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL--- 462

Query: 295 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 474
            Y+ I  LK+  P+L+  + VGG    E    ++ ++ + + R  F  SA+      GFD
Sbjct: 463 -YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFD 521

Query: 475 GIDLSWQLPKRKPKKIRSSIGSF 543
           G+DL W+ P  +    +S  G F
Sbjct: 522 GLDLDWEYPGMRGGSPKSDKGRF 544


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
 Frame = +1

Query: 115 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNENLDIDRAH 291
           +CY+ + S  R+ +A+  P D+ PA   CTHL+Y  A I Q +   M   N+    D+ +
Sbjct: 22  VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75

Query: 292 ANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGF 471
             + A   LK++ P+L+  L VGG +       ++ ++++   R  F +S + +   +GF
Sbjct: 76  PRFNA---LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGF 132

Query: 472 DGIDLSWQLP 501
           DG+DL W+ P
Sbjct: 133 DGLDLDWEYP 142


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 37/129 (28%), Positives = 64/129 (49%)
 Frame = +1

Query: 115 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 294
           +CYY + +  R   A+  P +++P+L  CTH++Y  A + AD  K+     N       A
Sbjct: 25  VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN-----DAA 76

Query: 295 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 474
            Y+ + +LK     ++  L VGG +    P  +  ++ +   R  F + A+L    + FD
Sbjct: 77  MYKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFD 133

Query: 475 GIDLSWQLP 501
           G+DL W+ P
Sbjct: 134 GLDLDWEYP 142


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +1

Query: 298 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 477
           Y+   +LK + P L+  L VGG +       ++ ++ +  +R  F +S++ +  Q+ FDG
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246

Query: 478 IDLSWQLP 501
            DL W+ P
Sbjct: 247 FDLDWEYP 254


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +1

Query: 298 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 477
           Y+ + +LK     ++  L VGG +    P  +  ++ +   R  F + A+L    + FDG
Sbjct: 2   YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58

Query: 478 IDLSWQLP 501
           +DL W+ P
Sbjct: 59  LDLDWEYP 66


>SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)
          Length = 172

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -3

Query: 560 FLMLCQKDPILERIFFGFLFGNCQDRSIPSKPYCSARRRAELVKAVRACGDSNKRLYFCG 381
           +L    +D   E++F G  +G          P+  AR    +VK+V      +  +Y C 
Sbjct: 90  YLPYLDEDGTKEKVFNG-AWGRYLAFKRRIYPHVFARYIRIIVKSVFRSASIHVEIYGCV 148

Query: 380 SSVSSSPPTVKN 345
           S +SSSPP  +N
Sbjct: 149 SRLSSSPPPREN 160


>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
          Length = 769

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 41  PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 181
           P P   R R   PT  H      K + T T R ++  +KHV  +RT+
Sbjct: 316 PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 362


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 41   PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 181
            P P   R R   PT  H      K + T T R ++  +KHV  +RT+
Sbjct: 983  PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 1029


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,461,729
Number of Sequences: 59808
Number of extensions: 320498
Number of successful extensions: 1037
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)