Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P19
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   1.1  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   2.6  
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    24   5.9  
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    23   7.9  

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 216  DRKTRLQVRSQHTCLRFSDIALAVIVAEDF 127
            D K RLQ R  +   +FS + LAV+ A+ F
Sbjct: 1053 DLKKRLQKRLGYNDTQFSKVKLAVLQAQSF 1082


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 94   TNHPASPSSQSKVLCYYDSKSYIRESQARMLA 189
            TN+   PSS   ++   DS  + +ES+ + LA
Sbjct: 1063 TNNTLEPSSVEAIVSSKDSDKHAKESKGKSLA 1094


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 233 TNLAGFKLTPFKW 271
           TNL   KLTP KW
Sbjct: 190 TNLVELKLTPHKW 202


>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 200 SLVFRSGPIFCTNLAGFKLTPFKWFHSMRIWTLIG 304
           +L+    P+      G   TPFK  H   +W  +G
Sbjct: 108 TLMLLVNPLKAITSTGSAFTPFKGTHPGTLWPAMG 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,368
Number of Sequences: 5004
Number of extensions: 20332
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)