Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_P19
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0644 - 5180148-5180308,5181124-5181305,5181348-5181583 28 1.7
06_03_0179 - 17604561-17606435 27 4.0
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 27 4.0
04_04_0600 + 26526667-26527692 27 4.0
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 26 6.9
04_04_0398 + 24933894-24933916,24934015-24934555 26 6.9
04_04_0236 + 23825368-23825763,23826229-23828667 25 9.2
03_02_0608 - 9818020-9818192,9818723-9818906,9818991-9819323,981... 25 9.2
02_01_0243 - 1601977-1602834,1602857-1603063 25 9.2
01_01_0351 + 2790469-2790534,2791089-2791173,2791921-2792021,279... 25 9.2
>11_01_0644 - 5180148-5180308,5181124-5181305,5181348-5181583
Length = 192
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 168 ISSTYAGYGLGAWSFGLDPFS 230
++ T++G G G+W FG+DP++
Sbjct: 156 LACTFSG-GFGSWKFGIDPWT 175
>06_03_0179 - 17604561-17606435
Length = 624
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 95 PTTQHHLVA--KAKSSATMTARAISENLKHVCWLRTWSLVFRSGPIFCTN 238
P T L A +KSS++ T+ + V + R W +V+RS + TN
Sbjct: 321 PKTTEELAAVTSSKSSSSSTSPCSRIHEVVVLYKRAWKVVYRSKQLLLTN 370
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Frame = +2
Query: 47 RPWSPSPGYW------R*RLRLPTTQHHLVAKAKSSA 139
R WSPS G W R RLPTT+ H + A
Sbjct: 433 RAWSPSVGDWLADRPRTLRFRLPTTKDHTTERISGLA 469
>04_04_0600 + 26526667-26527692
Length = 341
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 112 PSSQSKVLCYYDSKSYIRESQARMLATDLEP 204
P S S+VL Y DS + + AR+ ATDL P
Sbjct: 143 PRSVSRVL-YLDSDLLVVDDVARLWATDLGP 172
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +2
Query: 56 SPSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCWLRTWSLVFRSGPIFCT 235
SPSP PTT H ++ T + ++ + V WL++ L S P+ +
Sbjct: 38 SPSPAAHLCACSPPTTTHTTTTVTTTTTTASPAPVTTSPADVAWLKS-QLASNSLPLLAS 96
Query: 236 NLAGFKL 256
+ A +L
Sbjct: 97 HDAWHRL 103
>04_04_0398 + 24933894-24933916,24934015-24934555
Length = 187
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 152 RAISENLKHVCWLRTWSLVFRSGPIF 229
R I+ H C LRTWS ++ PIF
Sbjct: 58 RMITAFFYHGCGLRTWSAYRQNIPIF 83
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 97 NHPASPSSQSKVLCYYDSKSYIRESQARMLATDLEP 204
NHP +P ++C+ D + RE + T L P
Sbjct: 276 NHPCNPEMVRFMMCFKDLPDWQREHRPFNAKTRLNP 311
>03_02_0608 -
9818020-9818192,9818723-9818906,9818991-9819323,
9819455-9819592,9819707-9819836,9820151-9820266
Length = 357
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 106 ASPSSQSKVLCYYDSKSYIRESQARMLATDLEPGLSVWT 222
A PSS+S ++ Y + R + + +TD + VW+
Sbjct: 172 ARPSSESDMMTEYVVTRWYRAPELLLNSTDYSAAIDVWS 210
>02_01_0243 - 1601977-1602834,1602857-1603063
Length = 354
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +1
Query: 112 PSSQSKVLCYYDSKSYIRE-----SQARMLATDLEPGLSVWTHFLYQSGGIQADT 261
PS + +VLCY + +YI S+ R L + V +HF + G DT
Sbjct: 142 PSGEHRVLCYRNGDNYILSTGSGASEPRRLGPVPDHQRRVCSHFCVKVGVTVGDT 196
>01_01_0351 +
2790469-2790534,2791089-2791173,2791921-2792021,
2792601-2792683,2792829-2792874,2792969-2793025,
2793118-2793172,2793244-2793344,2793432-2793495,
2793604-2793737,2794158-2794346
Length = 326
Score = 25.4 bits (53), Expect = 9.2
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 273 NHLKGVSLNPARLVQKMGPDRKTRLQVRSQHTCLRFSDIALAV-IVAEDFALAT 115
+HL+ +SL R +QK RLQ+ Q F+DIAL V A D L+T
Sbjct: 7 DHLEALSLEIERKLQKALNSNSQRLQLLQQ----LFADIALKVDDRARDVILST 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,600,795
Number of Sequences: 37544
Number of extensions: 149343
Number of successful extensions: 351
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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