Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P19
         (309 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)        28   1.3  
SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.3  
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)                 28   1.8  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           27   4.1  
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)                   26   7.2  
SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  
SB_54059| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)             25   9.5  
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)                     25   9.5  

>SB_53201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 157 YIRESQARMLATDLEPGLSVWTHFL 231
           Y+RE  A  +AT L    +VW HFL
Sbjct: 12  YMRELNATSVATSLLSNTNVWQHFL 36


>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
          Length = 1136

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -3

Query: 256 QLESRQIGTENGSRPKDQAPSP*PAYVLEIL*YSSCCHSSR 134
           Q+E    GT+ G R KD++  P PA VLE L ++   + SR
Sbjct: 219 QVEKPAEGTKKGQR-KDKSKPPSPALVLENLRHTMLDYQSR 258


>SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -3

Query: 289 NSHGVKPFKRCQLESRQIGTENGSRPKDQAPSP*PAYVLEIL*YSSCCHSSRGLC 125
           N+   +P++ C L S Q GT NGS  + +  SP      + L YS       G C
Sbjct: 100 NNQERRPYRDCDLSSPQRGT-NGSPQEHEGLSPQENTPEDELQYSGSSEDGSGSC 153


>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
          Length = 769

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 59  PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCWLRTW 199
           P P   R R   PT  H      K + T T R ++  +KHV  +RT+
Sbjct: 316 PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 362


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 59   PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCWLRTW 199
            P P   R R   PT  H      K + T T R ++  +KHV  +RT+
Sbjct: 983  PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 1029


>SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 113 LVAKAKSSATMTARAISENLKHVCWLRTWSLVF 211
           LVA+ K++   TAR + +  +H+   + W++V+
Sbjct: 65  LVARCKNALIQTARTVVKRHRHMIAQQRWTVVY 97


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 289  NSHGVKPFKRCQLESRQIGTENGSRPKDQAPSP 191
            NS G K     Q +    G +NG +  DQ P P
Sbjct: 906  NSDGAKGSPHLQEQDNPDGAQNGHKEGDQPPDP 938


>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1725

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 302 RSRSKFSWSETI*KVSA*IP-PDWYRKWVQTERP 204
           RS  KFS  +T   +   IP PDWY  W   + P
Sbjct: 716 RSWLKFSPEDTDIWIYHKIPDPDWYASWASKDDP 749


>SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 95  PTTQHHLVAKA-KSSATMTARAISENLKHVC 184
           PT   H V +  + S+T+T   IS+N K +C
Sbjct: 631 PTYDEHRVKRVLELSSTITVTKISQNHKQIC 661


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -3

Query: 307  APDQGPNSHGVKPFKRCQLESRQIGTENGSRPKDQAPSP*P 185
            AP Q P      P +   ++  Q        PK QAP P P
Sbjct: 992  APSQSPIKTNAAPSESTVIDPLQAKRRIAHAPKTQAPKPSP 1032


>SB_54059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 142 YDSKSYIRESQARMLATDLEPGLSVWTHFLYQSGGIQ 252
           Y+ K  IRE+   +  +  E G+SV+  FL    G+Q
Sbjct: 27  YEQKYLIRETWKFLEVSKKEIGVSVYKRFLNMHPGLQ 63


>SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)
          Length = 810

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 92  LPTTQHHLVAKAKSSATMTARAISENLKHVCWLRTWSLVFRSGPIFCTNLAGFKL 256
           LP T     A+   S  + ARA+ ++     W   WS + RS  +   +L   K+
Sbjct: 610 LPATTGRPPARVIGSCHVWARALEDSFLKQVWHMPWSTI-RSKSVLVLDLGHLKI 663


>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
          Length = 1691

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 265 KRCQLESRQIGTENGSRPKDQAPS 194
           K+  + S+ +G   G RP+ QAP+
Sbjct: 467 KKNSVSSKDVGMRKGVRPRGQAPT 490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,372,817
Number of Sequences: 59808
Number of extensions: 156732
Number of successful extensions: 312
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)