Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P19
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19850.1 68418.m02358 hydrolase, alpha/beta fold family prote...    31   0.21 
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea...    28   1.5  
At5g25250.1 68418.m02993 expressed protein                             27   2.6  
At5g32621.1 68418.m03884 expressed protein contains Pfam profile...    25   7.8  
At3g33080.1 68416.m04236 hypothetical protein similar to protein...    25   7.8  
At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2 [...    25   7.8  
At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2 [...    25   7.8  
At1g10620.1 68414.m01204 protein kinase family protein contains ...    25   7.8  

>At5g19850.1 68418.m02358 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 359

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 106 ASPSSQSKVLC--YYDSKSYIRESQARMLATDLEPG-LSVWTHFLYQSGG 246
           A P +   +LC  Y+DS     E    +L   LEPG + V+  F+  SGG
Sbjct: 239 AKPETVKSILCQCYHDSSQVTDELVEAILRPGLEPGAVDVFLEFICYSGG 288


>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (10 copies); similar to WD-repeat protein
           3 (SP:Q9UNX4) [Homo sapiens]
          Length = 955

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 140 TMTARAISENLKHVCWLRTWSLV 208
           T+ A   S++LK +C+++ WSL+
Sbjct: 814 TLLALPFSDSLKFLCYMKDWSLI 836


>At5g25250.1 68418.m02993 expressed protein
          Length = 470

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 181 MLATDLEPGLSVWTHFLYQSGG 246
           M   DL+P +SVW H   Q GG
Sbjct: 401 MAVRDLQPKISVWNHGGEQGGG 422


>At5g32621.1 68418.m03884 expressed protein contains Pfam profile
           PF04827: Protein of unknown function (DUF635)
          Length = 625

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 179 VCWLRTWSLVFRSGPI--FCTNLAGFKLTPFKWFHSMRIW 292
           +CW+  W+ +     +  +  N+    +TP   FHS+ +W
Sbjct: 504 ICWVVAWNRLHTRDRLTSWGLNIPSVCMTPPNHFHSILLW 543


>At3g33080.1 68416.m04236 hypothetical protein similar to protein
           prospero GI:1346808 [Drosophila melanogaster]
          Length = 99

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 47  RPWSPSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKH 178
           +PWSP+ G W  + R     HH ++  + +  +    I++ L H
Sbjct: 41  QPWSPARGRWTIQSR-----HHYISLDRKTKPLKPSLINDILDH 79


>At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2
           [Lycopersicon esculentum] GI:5420276; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 461

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 183 HTCLRFSDIALAVIVAEDFALATR*CWVVGSRKRYRQ 73
           +T  + SD+  +V   +D  L T+ C +   R +YRQ
Sbjct: 404 YTTYKASDLKASVHALQDLQLNTKGCSLNSIRMKYRQ 440


>At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2
           [Lycopersicon esculentum] GI:5420276, cyclin [Medicago
           sativa] GI:1050559; contains Pfam profiles PF00134:
           Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
           domain
          Length = 450

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 183 HTCLRFSDIALAVIVAEDFALATR*CWVVGSRKRYRQ 73
           +T  + SD+  +V   +D  L T+ C +   R +YRQ
Sbjct: 395 YTTYKASDLKASVHALQDLQLNTKGCPLSAIRMKYRQ 431


>At1g10620.1 68414.m01204 protein kinase family protein contains
           serine/threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 718

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 301 DQGPNSHGVKPFKRCQLESRQIGTENGSRP-KDQAPS 194
           D G  S+ ++ F+R   +S  +GT  G  P +D A S
Sbjct: 665 DSGQYSNEIRIFRRASEDSSDLGTNTGYYPSQDYATS 701


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,690,319
Number of Sequences: 28952
Number of extensions: 112789
Number of successful extensions: 277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)