Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P18
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    36   0.001
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    27   0.33 
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    27   0.44 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   1.8  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    25   1.8  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    24   3.1  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    23   4.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    23   5.4  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    23   5.4  
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    23   5.4  
SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    23   7.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    23   7.1  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   7.1  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    23   7.1  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    22   9.4  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    22   9.4  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    22   9.4  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 35.5 bits (78), Expect = 0.001
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +2

Query: 116 EDAGKASACAGGPIHDLCASGEASCPDPTIELVKNRLSNV 235
           E+AG ASAC G P   +CAS      DP + LV  RL  +
Sbjct: 21  ENAGTASACEGCPNQQICASAPRG-EDPDLPLVVERLKEI 59


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 84  CTSTLSCEHKLRTPAKLPHALEARFMIYVPLAK-PHVQIQLL 206
           C     C    R P K+PH  + RF +YV     P+ + QL+
Sbjct: 430 CAIVYCCIALKRFPWKVPHTSDKRFNLYVTQRNDPNTKSQLI 471


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = -3

Query: 221 DSSQVQ*LDLDMRL-RQRHIDHESGLQRMRK 132
           DS+Q+Q L+  +R  +QR+ +HE  ++RM+K
Sbjct: 220 DSNQIQELENLLRKEKQRNTEHEKIIRRMKK 250


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 157 NRASSACGSFAGVLNLCSQ 101
           N  +  CG FA +  LCSQ
Sbjct: 181 NLKNQMCGEFAEIFQLCSQ 199


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 44  IDFLHQNEWVCQNMHLNIVL*TQIEDAGKASACAGGPIHDL 166
           IDF  + +W   + H+++++ T+  +   A        HDL
Sbjct: 222 IDFFSREDWPIISKHISLIVPTKKVNTTSAQTSLNNVEHDL 262


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 149  LQRMRKLCRRPQFVFT 102
            LQ MRKLC  P  + T
Sbjct: 1660 LQYMRKLCNHPALILT 1675


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 133 SFAGVLNLCSQDNVEVHILAHPLIL 59
           S   ++ LC   ++ +H+LAHP+ L
Sbjct: 380 SCLALMILCLYYDLHMHLLAHPISL 404


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 31  NITXYRLSSSK*VGVPEYAPQHCPVNTN 114
           N T Y   + K +  P Y  QH  + T+
Sbjct: 531 NATLYTFFTYKKLNTPNYVDQHAMIRTD 558


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 207 SIVGSGHE-ASPEAHRS*IGPPAHAEALPASSICVHRTMLRCI 82
           S++  G+    P +HRS   PP H   +  ++     T++ C+
Sbjct: 518 SLIAEGYNLVKPHSHRSYGTPPVHPIDIIIATNMAGMTIVLCV 560


>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 179 EASCPDPTIELVKNRLSNV 235
           E  CP+  ++ V+NRL N+
Sbjct: 189 EKECPNVRVKSVQNRLVNI 207


>SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 112

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 224 SDSSQVQ*LDLDMRLRQRHIDHESGLQRMRKL--CRRPQFVFT 102
           SDS ++Q  + D R R   I H   +QR++++    R  F+FT
Sbjct: 51  SDSDELQFENRDPRKRIDPIKHMLLVQRLKRVSTSSRRLFIFT 93


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 24  KLQYHYX*TFFIKMSGCARICTSTLSC 104
           KL+YH     F +   C R C   LSC
Sbjct: 569 KLRYHLLTEEFEEEHICFRPCNKKLSC 595


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 194 LDMRLRQRHIDHESGLQRMRKLCRRPQFVFTGQ 96
           +D R  ++  ++ES   R     RR QF FTG+
Sbjct: 102 IDARSTRKDTENES--LRKNNFKRRTQFAFTGR 132


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 80  NMHLNIVL*TQIEDAGKASACAGGPIHDLC 169
           N +   ++ T+I D    +    GP+ DLC
Sbjct: 200 NKYKQYIIQTKIPDGASTTVYRCGPLIDLC 229


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 102 RTMLRCIFWHTHSF 61
           R  +RCI W  H F
Sbjct: 260 RFSIRCILWDEHDF 273


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 182 LRQRHIDHESGLQRMR 135
           + QRH D ES LQ+M+
Sbjct: 286 ITQRHTDIESRLQKMQ 301


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -3

Query: 182 LRQRHIDHESGLQRMRKLCRRPQFVFTGQC*GAYSGTPTHFDEESLXIVILKFLVIGFN 6
           + Q+   +E G  R  ++C+   F+F G   G         +E ++    L+FL+I F+
Sbjct: 609 MNQQRFLNEIG--RQIQVCKLSGFLFFGTINGVEKNIAGLIEELNVSNNPLRFLIIDFS 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,007,741
Number of Sequences: 5004
Number of extensions: 17499
Number of successful extensions: 46
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)