Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_P18
(235 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842 40 3e-04
04_04_0299 - 24243364-24244259,24244417-24244428,24245092-242451... 35 0.008
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 28 1.2
07_03_1193 - 24702135-24702421,24702835-24703160,24703240-247039... 27 2.8
11_06_0631 - 25656885-25657000,25658591-25658658,25658957-256589... 26 4.9
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 26 4.9
07_01_0920 + 7749937-7750264,7750416-7750546,7751686-7751747,775... 25 6.5
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 25 6.5
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331... 25 6.5
08_01_0653 + 5633673-5634821,5635730-5635885,5635942-5636152,563... 25 8.6
02_04_0035 + 19078267-19078479,19078588-19078674,19079792-190798... 25 8.6
01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432... 25 8.6
>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
Length = 355
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 107 TQIEDAGKASACAGGPIHDLCASGEASCPDPTIELVKNRLSNV 235
TQ E+AGKA ACAG P +CA+ PDP + + R++ V
Sbjct: 27 TQSEEAGKADACAGCPNQQICATAPKG-PDPDLVGIVERMATV 68
>04_04_0299 -
24243364-24244259,24244417-24244428,24245092-24245193,
24245298-24245340
Length = 350
Score = 35.1 bits (77), Expect = 0.008
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 107 TQIEDAGKASACAGGPIHDLCASGEASCPDP 199
TQ E AGKA ACAG P +CA+ PDP
Sbjct: 19 TQSEAAGKADACAGCPNQQICATAPKG-PDP 48
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 83 MHL-NIVL*TQIEDAGKASACAGGPIHDLCASGEASCPDPTIE 208
MH NIV ++ AG+ ACA GP + EA+ P P +
Sbjct: 124 MHAWNIVTQLRVSRAGRERACAAGPDEEQ-PEAEAAAPAPAAD 165
>07_03_1193 -
24702135-24702421,24702835-24703160,24703240-24703910,
24704342-24704421,24704515-24704572
Length = 473
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 207 SIVGSGHEASPEAHRS*IGPPAHAEALPASSICVHRTMLRCIFWH 73
++ G H+A+ AH G A A A P H +R + WH
Sbjct: 279 AVTGKKHDANANAHGRGNGVAAAAMAAPLLQCTTHMCPVR-VHWH 322
>11_06_0631 -
25656885-25657000,25658591-25658658,25658957-25658996,
25659742-25659820,25659918-25661707,25662030-25662037,
25662305-25662367,25662504-25662820
Length = 826
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -2
Query: 216 FTSSIVGS----GHEASPEAHRS*IGPPAHAEALPASSICVHRTMLR 88
F+ S+ G H AS A P A A+ PAS C HR + R
Sbjct: 59 FSCSLTGEHPNPSHPASASASNFFSSPAACADPHPASRGCFHRIVYR 105
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 180 SPEAHRS*IGPPAHAEALPASSICVHRTMLRCI 82
+P HR + P A A PA++ R +LRC+
Sbjct: 21 APSRHRRKVAPAA-ASPAPAAAAAAARHLLRCL 52
>07_01_0920 +
7749937-7750264,7750416-7750546,7751686-7751747,
7752007-7752070
Length = 194
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 220 ILHKFNSWIWT*GFARGT*IMNRASSACGSF 128
IL + WIWT A GT + R ++ G+F
Sbjct: 87 ILCSISPWIWTPSPAAGTDHLRRGAALKGNF 117
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 131 ASACAGGPIHDLCASGEASCPDPTIELVKNRLS 229
ASA AGG D +SG P P + +RLS
Sbjct: 56 ASAAAGGASSDSYSSGSCHSPFPEWSRLVDRLS 88
>01_06_1087 -
34430521-34430899,34432336-34432806,34432926-34433112,
34433470-34433599,34433794-34434125,34434566-34435050,
34435185-34435752,34436579-34436640,34437569-34437636
Length = 893
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 17 LQETSISLXIDFLHQNEWVCQNMHLNIV 100
L+ETSI+L DFL + + + + H N+V
Sbjct: 491 LRETSITLSKDFLPEVQILSKVQHKNLV 518
>08_01_0653 +
5633673-5634821,5635730-5635885,5635942-5636152,
5636488-5636624
Length = 550
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 148 SSACGSFAGVLNLCSQDNVEVHILAH 71
S C V CS+D+ VH+LAH
Sbjct: 460 SFTCKDLQMVKIRCSKDDARVHMLAH 485
>02_04_0035 +
19078267-19078479,19078588-19078674,19079792-19079863,
19080338-19080526,19080599-19080718,19081348-19081430,
19081518-19081773,19081878-19082199,19086355-19086548,
19087135-19087227,19089327-19089497,19089580-19089699,
19090303-19090373,19090608-19090675,19091097-19091191
Length = 717
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 119 DAGKASACAGGPIHDLCASGEAS 187
DAG +S CAG P H SG +
Sbjct: 690 DAGYSSPCAGRPDHTNSLSGSTT 712
>01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,
4329925-4331469,4332220-4332429,4332563-4332713,
4332791-4333031,4333898-4333956,4334379-4334653,
4334813-4334955,4335034-4335088,4335181-4335258,
4335351-4335478,4335533-4335575
Length = 1173
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 168 HRS*IGPPAHAEALPASSICVHRTMLRCIFWHTHS 64
HR+ I P + + L AS I + RCI W HS
Sbjct: 1116 HRNGIQSPTY-QCLAASIINWQADVERCIEWEAHS 1149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,771,195
Number of Sequences: 37544
Number of extensions: 129170
Number of successful extensions: 387
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -