Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P18
         (235 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42873| Best HMM Match : DB (HMM E-Value=7.1)                        31   0.15 
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   26   4.2  
SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)                       26   5.5  
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)          26   5.5  
SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)               25   9.6  
SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)                   25   9.6  
SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)                 25   9.6  
SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)                  25   9.6  

>SB_42873| Best HMM Match : DB (HMM E-Value=7.1)
          Length = 321

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -3

Query: 230 LISDSSQVQ*LDLDMRLRQRHIDHESGLQRM 138
           L+S+ S++Q  D+D++L  +H+ HE+   R+
Sbjct: 184 LLSEESELQYCDVDIKLLSKHLSHETAFGRI 214


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 152 PIHDLCASGEASCPDPTIELVKNR 223
           P+   CAS + S PD + E +KNR
Sbjct: 846 PLVPSCASSDVSVPDFSNETIKNR 869


>SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)
          Length = 669

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 228 DKRFFTSSIVGSGHEASPEAHRS*IGPPAHAEALPASS 115
           D+ F+ S +  +G   + +A+R+  GP     +LP SS
Sbjct: 191 DEDFYKSDLARTGLRKANDANRALFGPGGTWNSLPCSS 228


>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
          Length = 497

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -2

Query: 156 IGPPAHAEALPASSICVHRTML--RCIFWHTHS 64
           + P  H + L  SS+   R     RCI WH HS
Sbjct: 22  VTPCQHVQPLLLSSLMTPRQPRPKRCITWHVHS 54


>SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 89  LNIVL*TQIEDAGKASACAGGPIHDLCASGEASCP 193
           L I +    ED G A   +  PI D C S  A+ P
Sbjct: 107 LKITIKNHNEDTGTAKPSSRSPIEDTCLSFTAANP 141


>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 38  LXIDFLHQNEWVCQNM 85
           L +DFLH N  VCQ +
Sbjct: 635 LSVDFLHYNSHVCQTI 650


>SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)
          Length = 1123

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 69   GCARICTSTLSCEHKLR 119
            GCA+ C +++SC+ K +
Sbjct: 1017 GCAKTCKASISCQPKFK 1033


>SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)
          Length = 600

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 213 TSSIVGSGHEASPEAHRS*IGPPAHAEALPASS 115
           T S +G G E  P   +  I PPAH +  P +S
Sbjct: 142 TGSQIG-GSEPPPSGEQLEIRPPAHGDEKPETS 173


>SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
          Length = 541

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 38  LXIDFLHQNEWVCQ 79
           L +DFLH N  VCQ
Sbjct: 353 LSVDFLHYNSHVCQ 366


>SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
          Length = 476

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 38  LXIDFLHQNEWVCQ 79
           L +DFLH N  VCQ
Sbjct: 288 LSVDFLHYNSHVCQ 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,611,366
Number of Sequences: 59808
Number of extensions: 138268
Number of successful extensions: 324
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 16,821,457
effective HSP length: 55
effective length of database: 13,532,017
effective search space used: 297704374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)