Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P18
         (235 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U01833-1|AAA61932.1|  320|Homo sapiens protein ( Human nucleotid...    39   0.002
BC109323-1|AAI09324.1|  320|Homo sapiens nucleotide binding prot...    39   0.002
BC100290-1|AAI00291.1|  309|Homo sapiens NUBP1 protein protein.        39   0.002
BC109322-1|AAI09323.1|  320|Homo sapiens nucleotide binding prot...    36   0.023
AK223204-1|BAD96924.1|  320|Homo sapiens nucleotide binding prot...    36   0.023
M76559-1|AAA51903.1| 1091|Homo sapiens calcium channel alpha-2b ...    28   4.6  
BC117470-1|AAI17471.1| 1091|Homo sapiens calcium channel, voltag...    28   4.6  
BC117468-1|AAI17469.1| 1091|Homo sapiens calcium channel, voltag...    28   4.6  
AF083854-1|AAF03259.1| 1110|Homo sapiens dihydropyridine recepto...    28   4.6  
AC006145-1|AAD20938.1|  745|Homo sapiens WUGSC:H_DJ0560O14.1 pro...    28   4.6  
AB209603-1|BAD92840.1|  337|Homo sapiens amyloid beta (A4) precu...    27   8.1  

>U01833-1|AAA61932.1|  320|Homo sapiens protein ( Human
           nucleotide-binding protein mRNA, complete cds. ).
          Length = 320

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 122 AGKASACAGGPIHDLCASGEASCPDPTIELVKNRLSNV 235
           AG+ ++C G P   LCASG  + PD  IE +K ++  V
Sbjct: 16  AGRGASCQGCPNQRLCASGAGATPDTAIEEIKEKMKTV 53


>BC109323-1|AAI09324.1|  320|Homo sapiens nucleotide binding protein
           1 (MinD homolog, E. coli) protein.
          Length = 320

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 122 AGKASACAGGPIHDLCASGEASCPDPTIELVKNRLSNV 235
           AG+ ++C G P   LCASG  + PD  IE +K ++  V
Sbjct: 16  AGRGASCQGCPNQRLCASGAGATPDTAIEEIKEKMKTV 53


>BC100290-1|AAI00291.1|  309|Homo sapiens NUBP1 protein protein.
          Length = 309

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 122 AGKASACAGGPIHDLCASGEASCPDPTIELVKNRLSNV 235
           AG+ ++C G P   LCASG  + PD  IE +K ++  V
Sbjct: 16  AGRGASCQGCPNQRLCASGAGATPDTAIEEIKEKMKTV 53


>BC109322-1|AAI09323.1|  320|Homo sapiens nucleotide binding protein
           1 (MinD homolog, E. coli) protein.
          Length = 320

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 122 AGKASACAGGPIHDLCASGEASCPDPTIELVKNRLSNV 235
           AG+ ++C G P   LCASG  +  D  IE +K ++  V
Sbjct: 16  AGRGASCQGCPNQRLCASGAGATADTAIEEIKEKMKTV 53


>AK223204-1|BAD96924.1|  320|Homo sapiens nucleotide binding protein
           1 (MinD homolog, E. coli) variant protein.
          Length = 320

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 122 AGKASACAGGPIHDLCASGEASCPDPTIELVKNRLSNV 235
           AG+ ++C G P   LCASG  +  D  IE +K ++  V
Sbjct: 16  AGRGASCQGCPNQRLCASGAGATADTAIEEIKEKMKTV 53


>M76559-1|AAA51903.1| 1091|Homo sapiens calcium channel alpha-2b
           subunit protein.
          Length = 1091

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 197 DLDMRLRQRHIDHESGLQRMRKLCRRPQFVFTGQC*GAYSGTPTHFDEESLXIVI 33
           D+ + +R + ID ESG +  R L +     +  +    Y+ TP +  + SL +V+
Sbjct: 550 DIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSLALVL 604


>BC117470-1|AAI17471.1| 1091|Homo sapiens calcium channel,
           voltage-dependent, alpha 2/delta subunit 1 protein.
          Length = 1091

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 197 DLDMRLRQRHIDHESGLQRMRKLCRRPQFVFTGQC*GAYSGTPTHFDEESLXIVI 33
           D+ + +R + ID ESG +  R L +     +  +    Y+ TP +  + SL +V+
Sbjct: 550 DIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSLALVL 604


>BC117468-1|AAI17469.1| 1091|Homo sapiens calcium channel,
           voltage-dependent, alpha 2/delta subunit 1 protein.
          Length = 1091

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 197 DLDMRLRQRHIDHESGLQRMRKLCRRPQFVFTGQC*GAYSGTPTHFDEESLXIVI 33
           D+ + +R + ID ESG +  R L +     +  +    Y+ TP +  + SL +V+
Sbjct: 550 DIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSLALVL 604


>AF083854-1|AAF03259.1| 1110|Homo sapiens dihydropyridine receptor
           alpha 2 subunit protein.
          Length = 1110

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 197 DLDMRLRQRHIDHESGLQRMRKLCRRPQFVFTGQC*GAYSGTPTHFDEESLXIVI 33
           D+ + +R + ID ESG +  R L +     +  +    Y+ TP +  + SL +V+
Sbjct: 569 DIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSLALVL 623


>AC006145-1|AAD20938.1|  745|Homo sapiens WUGSC:H_DJ0560O14.1
           protein.
          Length = 745

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 197 DLDMRLRQRHIDHESGLQRMRKLCRRPQFVFTGQC*GAYSGTPTHFDEESLXIVI 33
           D+ + +R + ID ESG +  R L +     +  +    Y+ TP +  + SL +V+
Sbjct: 204 DIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSLALVL 258


>AB209603-1|BAD92840.1|  337|Homo sapiens amyloid beta (A4)
           precursor protein-binding, family A, member 3 variant
           protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -2

Query: 231 FDKRFFTSSIVGS---GHEASPEAHRS*IGPPAHAEALPASSICVHRTMLRCI 82
           F  R   SS+V S   G  AS  A    +G        PASS C  R M RCI
Sbjct: 224 FSPRSAASSVVASPSVGASASATASLRSMGRVWWPRHTPASSSCSPRPMARCI 276


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,753,578
Number of Sequences: 237096
Number of extensions: 715896
Number of successful extensions: 1541
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 76,859,062
effective HSP length: 56
effective length of database: 63,581,686
effective search space used: 1335215406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)