Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P17
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   2.2  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    26   2.2  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    24   8.7  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    24   8.7  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    24   8.7  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    24   8.7  
SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...    24   8.7  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    24   8.7  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 136 IQYSWFHLGLYCSTVFTIC 192
           I Y WF   L C   FT+C
Sbjct: 794 ISYDWFDFFLRCGVDFTVC 812


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 199 PWSWISTCCCPDRASMAHVSQKSIELAESKKYR 297
           P+  +     PD   + HV  K  E+AES ++R
Sbjct: 53  PFGLVRYGVAPDHPEVKHVEHKFSEIAESTQFR 85


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 6   CCGFCNSAFSLLND 47
           CC FC+S F+ L D
Sbjct: 59  CCLFCDSTFTCLKD 72


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 208 WISTCCCPDRASMAHVS 258
           WI TC CP+R+++  VS
Sbjct: 181 WI-TCTCPERSTIERVS 196


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 109 KIIQSDNHIIQYSWFHL 159
           K  QSD H + Y W HL
Sbjct: 365 KYAQSDTHYLLYIWDHL 381


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 215  LLAAVLTVPPWPMYRRNPLNWQNPRNTDEKP 307
            L A  +  PP P YR NP    NP     +P
Sbjct: 924  LPAKSIAAPPGPEYRLNPSRPINPFEPTAEP 954


>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 284 DSASSMDFCDTWAMEARSGQQQVEIQLQG 198
           DS    +  ++W  E + G+Q++EI++ G
Sbjct: 65  DSEIIKESDESWPPENKDGKQELEIRMNG 93


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 59  FSSIPTHIDYVGQAKAEKL 115
           +S +P++++Y   AKAEKL
Sbjct: 845 WSRLPSNLEYCSWAKAEKL 863


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,596
Number of Sequences: 5004
Number of extensions: 36377
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)