Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P17
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g40042.1 68417.m05669 expressed protein                             61   3e-10
At2g22425.1 68415.m02659 expressed protein weak similarity to Sw...    60   5e-10
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ...    28   3.1  
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   5.4  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   5.4  
At5g20770.1 68418.m02468 hypothetical protein                          27   5.4  
At3g19600.1 68416.m02485 NLI interacting factor (NIF) family pro...    27   5.4  
At5g10180.1 68418.m01178 sulfate transporter identical to sulfat...    26   9.4  
At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein ...    26   9.4  

>At4g40042.1 68417.m05669 expressed protein
          Length = 155

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 23/76 (30%), Positives = 43/76 (56%)
 Frame = +2

Query: 80  IDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVYILGAGFLLAAVLTVPPWPMYR 259
           +D+ GQ  AE+L + ++ + ++V F+ GY    F   + I   G +L  ++T+P WP + 
Sbjct: 63  MDWQGQKLAEQLMQILLLIAAVVSFVVGYTTASFRMMMLIYAGGVVLTTLITIPNWPCFN 122

Query: 260 RNPLNWQNPRNTDEKP 307
           R+ L W +P   ++ P
Sbjct: 123 RHHLKWLDPSEAEKHP 138


>At2g22425.1 68415.m02659 expressed protein weak similarity to
           Swiss-Prot:Q9Y6A9 microsomal signal peptidase 12 kDa
           subunit (SPase 12 kDa subunit, SPC12, HSPC033) [Homo
           sapiens]
          Length = 92

 Score = 60.5 bits (140), Expect = 5e-10
 Identities = 23/76 (30%), Positives = 41/76 (53%)
 Frame = +2

Query: 80  IDYVGQAKAEKLYRAIITLFSIVGFIWGYIVQQFSQSVYILGAGFLLAAVLTVPPWPMYR 259
           +D+ GQ   E+L + ++ +  +V  + GY  + F   + I   G +L  ++TVP WP Y 
Sbjct: 1   MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYN 60

Query: 260 RNPLNWQNPRNTDEKP 307
            +PL W +P   ++ P
Sbjct: 61  LHPLKWLDPSEAEKHP 76


>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
            bromodomain-containing protein low similarity to
            SP|P51123 Transcription initiation factor TFIID 230 kDa
            subunit {Drosophila melanogaster}; contains Pfam
            profiles: PF00439 bromodomain, PF00240: Ubiquitin family
          Length = 1700

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +1

Query: 253  VSQKSIELAESKKYR*ETDRQEREKMK 333
            VS++  E+AES++YR E  R ERE+ K
Sbjct: 1491 VSEERSEIAESRRYR-EVIRSEREEEK 1516


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = -2

Query: 346 TSFSISFFPFLA-CRFLIGISWILP--VQWIS 260
           TS  +S + FL+ C F+IG S+I+P   +WIS
Sbjct: 152 TSPLVSLWVFLSGCAFVIGASFIIPPIFRWIS 183


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = -2

Query: 346 TSFSISFFPFLA-CRFLIGISWILP--VQWIS 260
           TS  +S + FL+ C F+IG S+I+P   +WIS
Sbjct: 220 TSPLVSLWVFLSGCAFVIGASFIIPPIFRWIS 251


>At5g20770.1 68418.m02468 hypothetical protein
          Length = 231

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 108 SAFACPT*SICVGMDEKKIHY 46
           + FAC   SIC G +E  +HY
Sbjct: 125 ATFACGVLSICAGDEEMAVHY 145


>At3g19600.1 68416.m02485 NLI interacting factor (NIF) family
           protein low similarity to CTD phosphatase [Xenopus
           laevis] GI:13487713; contains Pfam profile PF03031: NLI
           interacting factor
          Length = 601

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 314 CLSVSHRYFLDSASSMDFCDTWAMEARSGQQQVEIQ 207
           CLS + +Y ++ A S    D W M+ R     + I+
Sbjct: 107 CLSEAEKYLIEEAGSTTREDLWKMKVRGDPISITIE 142


>At5g10180.1 68418.m01178 sulfate transporter identical to sulfate
           transporter [Arabidopsis thaliana] GI:2114104
          Length = 677

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 134 LFSIVGFIWGYIVQQFSQSVYILGAGFLLAAVLT 235
           + S++  +W    QQ+S   +ILG  FL   ++T
Sbjct: 262 IVSVLRAVWRSCQQQWSPHTFILGCSFLSFILIT 295


>At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 338

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 142 YSWFHLGLYCSTVFTICIYPWSWIS 216
           Y +F   L CST+  I ++ +SW+S
Sbjct: 184 YPFFVCFLSCSTLLCIYVFVFSWVS 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,814,245
Number of Sequences: 28952
Number of extensions: 178734
Number of successful extensions: 480
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)