Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P16
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF016444-7|AAB65924.1|  204|Caenorhabditis elegans Hypothetical ...    28   2.1  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical...    28   2.8  
AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical...    28   2.8  
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical...    28   2.8  
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam...    28   2.8  
AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gam...    28   2.8  
AF068708-2|AAC17753.1|  464|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AF390558-1|AAK72007.1|  308|Caenorhabditis elegans ced-3 proteas...    27   6.4  
AF003740-4|AAL08030.1|  308|Caenorhabditis elegans Ced-3 proteas...    27   6.4  
U21308-5|AAB93318.1|  258|Caenorhabditis elegans Warthog (hedgeh...    26   8.5  

>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
           protein B0393.5 protein.
          Length = 1106

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
 Frame = +3

Query: 144 ETDCPAGTHITAKGL-CPSQQHRGVECCHSVLRKINTCRSHGGECMD-------RCPENL 299
           E +C AG    A+G  C  +    VE CH      NT  S+  EC D        C E +
Sbjct: 512 ECECLAGFERIAEGAHCTDRDECAVEPCHPAAICSNTRGSYKCECRDGFVGDGKTCHETI 571

Query: 300 TYKNADDCNI 329
            Y  ++D  +
Sbjct: 572 LYPISNDSTV 581


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = +3

Query: 99  DEQPCNAFGGKCTEAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECM 278
           DEQ C +   KC +    C  G  I    +C      G E C     ++ T  S+    +
Sbjct: 155 DEQNCTSKTSKCPDNNFQCSNGNCIFKNWVCD-----GEEDCSDGSDELLTAPSNCNRTV 209

Query: 279 DRCPENLTYK 308
           ++CP    +K
Sbjct: 210 NQCPPGEMWK 219


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = +3

Query: 99  DEQPCNAFGGKCTEAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECM 278
           DEQ C +   KC +    C  G  I    +C      G E C     ++ T  S+    +
Sbjct: 157 DEQNCTSKTSKCPDNNFQCSNGNCIFKNWVCD-----GEEDCSDGSDELLTAPSNCNRTV 211

Query: 279 DRCPENLTYK 308
           ++CP    +K
Sbjct: 212 NQCPPGEMWK 221


>AF016444-7|AAB65924.1|  204|Caenorhabditis elegans Hypothetical
           protein C36C5.5 protein.
          Length = 204

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +3

Query: 129 KCTEAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYK 308
           K  E    C      T KG+ P ++   V+   +    ++   +   EC D+  EN  YK
Sbjct: 72  KSCETIPTCFETPQCTPKGIAPEEKKEMVKKIKNYCSGVSYIANDFEECRDKLAENKCYK 131

Query: 309 NAD 317
           + D
Sbjct: 132 DWD 134


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
 Frame = +3

Query: 60  NGVIEP-SKATLVYDEQPCNAFGGKCTEAETDCPAGTHITA-KGLCPSQQHRGVECCHSV 233
           NG   P + + L  D  P N     CT     CP G   TA K  CPS   +    C +V
Sbjct: 188 NGNCIPLTTSNLCSDGSPPN---NTCTRDPYSCPKGHFCTAQKVCCPSTALQSSIGCSTV 244

Query: 234 LRKINTCRSHGGECMDRCPE 293
                +C   G  C + C E
Sbjct: 245 CTIDESC-PKGMTCQNNCCE 263


>AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15c protein.
          Length = 903

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 166 VPAGQSVSASVHFPPNALQGCSS*TNVALLGSITP 62
           +PAG S SAS     +   GC S ++ ALL S TP
Sbjct: 296 MPAGVSPSASQKSVHSIANGCYSRSSAALLDSDTP 330


>AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15b protein.
          Length = 951

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 166 VPAGQSVSASVHFPPNALQGCSS*TNVALLGSITP 62
           +PAG S SAS     +   GC S ++ ALL S TP
Sbjct: 344 MPAGVSPSASQKSVHSIANGCYSRSSAALLDSDTP 378


>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15a protein.
          Length = 1107

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 166 VPAGQSVSASVHFPPNALQGCSS*TNVALLGSITP 62
           +PAG S SAS     +   GC S ++ ALL S TP
Sbjct: 500 MPAGVSPSASQKSVHSIANGCYSRSSAALLDSDTP 534


>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma
           1B protein.
          Length = 1107

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 166 VPAGQSVSASVHFPPNALQGCSS*TNVALLGSITP 62
           +PAG S SAS     +   GC S ++ ALL S TP
Sbjct: 500 MPAGVSPSASQKSVHSIANGCYSRSSAALLDSDTP 534


>AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gamma
           1A protein.
          Length = 952

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 166 VPAGQSVSASVHFPPNALQGCSS*TNVALLGSITP 62
           +PAG S SAS     +   GC S ++ ALL S TP
Sbjct: 344 MPAGVSPSASQKSVHSIANGCYSRSSAALLDSDTP 378


>AF068708-2|AAC17753.1|  464|Caenorhabditis elegans Hypothetical
           protein C18G1.6 protein.
          Length = 464

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 219 CCHSVLRKINTCRSHGGEC 275
           C   + +K NTCRS GG C
Sbjct: 426 CVEKIRKKPNTCRSTGGMC 444


>Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical
           protein E03H4.5 protein.
          Length = 458

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 210 GVECCHSVLRKINTCRSHGGECMD 281
           GV  C   + K NTC S GG C D
Sbjct: 417 GVNNCVLQMEKPNTCVSTGGMCRD 440


>AF390558-1|AAK72007.1|  308|Caenorhabditis elegans ced-3 protease
           suppressor 6 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 171 CEYQPDSPFQLRYTSRRTHYK 109
           CE++PD  F  ++ S+ T YK
Sbjct: 120 CEFKPDITFPQKFLSQNTDYK 140


>AF003740-4|AAL08030.1|  308|Caenorhabditis elegans Ced-3 protease
           suppressor protein 6 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 171 CEYQPDSPFQLRYTSRRTHYK 109
           CE++PD  F  ++ S+ T YK
Sbjct: 120 CEFKPDITFPQKFLSQNTDYK 140


>U21308-5|AAB93318.1|  258|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 10 protein.
          Length = 258

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 108 PCNAFGGKCTEAETDCPAGTHI-TAKGLCPSQQHRGVECC 224
           PC   G +C + +T C A T + +     P+ +   + CC
Sbjct: 53  PCGEVGKRCIDDQTSCRAETDVFSGMRWAPNGESILLRCC 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,812,612
Number of Sequences: 27780
Number of extensions: 158468
Number of successful extensions: 475
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)